Entry |
|
Symbol |
TNRC6A
|
Name |
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
|
KO |
K18412 | trinucleotide repeat-containing gene 6 protein |
|
Organism |
cbrc Corvus brachyrhynchos (American crow)
|
Brite |
KEGG Orthology (KO) [BR:cbrc00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cbrc03019]
103615369 (TNRC6A)
03036 Chromosome and associated proteins [BR:cbrc03036]
103615369 (TNRC6A)
Messenger RNA biogenesis [BR:cbrc03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103615369 (TNRC6A)
Chromosome and associated proteins [BR:cbrc03036]
Eukaryotic type
Gene silencing
piRNA pathway
103615369 (TNRC6A)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
Unknown
|
AA seq |
1954 aa
METNTTFCSRELEAKATKEVERKLSRAFLPHLCGTERRDLVQEEEEQLMEERKKRKEDKK
KKEAAQKKAIEQKIKVPEQTKTSVSQPQPVTSNGTSTGTSTTNNAKRAPASSQQQPLPRY
PPREVPPRFRHQEQKQLLKRGQQLPVIAANLGSTPKVLNGQSGGSTGTNNQPVTNGEVPN
SSKKQPGMPPIRDLVSHSPNQSDLNHSGLGSHYENSHWGPVSSNSDSSTNWDKVIVDGSD
KEAWPSITGSDPELTSECMDTDSASSSGSERNLVIMASGSTGGESDGIRNGIGHGSQNKF
VVGSNSNNVGNGSINGPWGLSHGSIISTCQVSVDAPDSKSESSNNRMNAWGTINSSSNGG
LNPSTLNSNGNHGAWSVLENSGHALKGSVGSGSPGTSIQCSTIGQMANSQSINSKVGGSA
HGSWGSLQESCDSEVNGTRNVSFSGQPQNLNTEMNGPNNTTNFMTSSLPNSAGSVQMNEL
PNTAGPGAWRVSTMNHSQIQASPVANGTSISHLSNGEAKTGGSYGTTWGAYGSSYSGDKC
PGPNSQANGDTVNATLMQPGGSGPGSTNFQINGNKGGGVWEAGTVNSQNVPWGNGNGASA
GGSRRGWGNPAQNTGTNISNGEWSKLPSNQHSNEGVNGNSRKFTNGWKSTEEDDLNSQSS
AASQMAEQSSTWAKTGTGDSEGSSESTGCHEDRAAVEGQNRERRKVDQHTLLQSIVNRTD
LDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGGSVTQTSSSGGCVDRPSP
NNNDTSSVSGWGDPKSATRWGDSKGSNSQGGWEEDSAATVMVKSNQSWGSGKEEKSSWND
TPKMKQGWGDGQKASQGWAVSAGDSWGENSRSNHWGEAKKSSSGGSNSDRSVSGWNEPGK
SNSVTWGGNNATPNNSSGWDEPAKSNQNQGWGDPPKSNQPQVWGDSSKPVNSPEWNKQDV
GSWGAPSAANKPPGSGWLGGPMPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSK
YNYKNVNMWNKNVPNSSSSSDQQAQVHPQLLSSSAMSSKESSSGSGWGEPSTPATTVDNG
TSAWGKPMDTGTSWGEPVSDAGGTSGWGNASLGQQPPNKPGPKSMQDSWCGDDMPLTGSR
QTSWEEEEDVEIGMWNSSSSQEANPSLNWPPYMKKMPTKGIMKGGNKQDETWINPFIKQF
TNLSFSRESPEETIQSNKMDMSGGLLQDKRMEMDKHGLGVGDYNRVVGKGPGSRPQIPKE
SSMDRGPYFDKDGIVADESQNMQFMSNQNMKLPPSNNALPNQALGSLTGLGMQSLNSVRQ
NGNPSVFGVGNIAAQPRSMQQPPAQPLNSSQPNPRAQVPPPLLSPQVPVSLLKYAPNSGG
LSPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQKAQPQRSMPSGGRQQQEQQGRSLS
MQQQMMQQSRQLDPNLLMKQQTPPSQQQSLHQPSMKSFLENVIPHATPELQKGPSPINAF
SSFPIGMNSNLNVNRDMSSIKEPQSRLRKWTTVDSISVNTSLDQNSSKHGAISSGFRLED
SPFVPYDFMNSSNSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPET
DPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVSLSST
AQSTSVARNSDSKSTWSPGSVTNTSLAHELWKVPLPPKSITAPSRPPPGLTGQKPPLSTW
DNSLRLGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLI
TFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQSLTP
SPGWQSLGSSQSRLGSIDGSHSFSNRNDLNHWNGAGLSGTSSGDLHGTSLWGSPNYSTSL
WGAPSSNDTRGISSPSPINAFLSVDHLGGGGESM |
NT seq |
5865 nt +upstreamnt +downstreamnt
atggaaaccaataccactttctgttccagagaattggaagctaaagctaccaaagaagtc
gaaagaaaactaagcagggctttcctgcctcatttatgtggaactgagagaagggattta
gtgcaagaagaggaagaacagttgatggaagaaaggaaaaagagaaaagaagacaagaag
aagaaggaagctgctcaaaaaaaggccattgaacaaaaaatcaaagtgccagaacaaacc
aagacaagtgtaagccagccccagcctgtcacctccaacggcacttccacaggaaccagc
actactaataatgccaagcgggccccagccagcagccagcagcagcccttgcctcgatac
cctcctcgggaagtaccaccgcgattccgacaccaggaacagaaacagcttctgaaacga
gggcagcagttaccagtgatagctgcaaacctgggatccactcccaaagtgttaaacggc
cagtcaggaggcagcactggcaccaataaccagcccgtgaccaacggagaagtgcccaac
agcagcaaaaaacagccaggcatgcctcccattcgggacttggtgagccactcccctaac
cagtcagatctgaaccacagtggtctaggatcccattatgaaaattctcactggggacca
gtctcttcaaatagtgactccagcacaaactgggataaagttatcgtagacggctctgac
aaagaagcatggccatcaatcactggcagtgacccagagctgacttcagaatgtatggac
actgactctgcctccagctctgggtcggagcggaacctcgttatcatggcttcagggagc
acaggcggagaaagcgatggcattcgcaatggcatcggacatgggtctcagaataagttt
gtggttggtagcaacagcaataatgtgggcaatggaagtattaatgggccgtgggggtta
tcccatggatccataataagcacatgtcaagtttctgtggatgctcctgacagcaaatct
gaaagtagcaacaatagaatgaatgcttggggcaccataaactcttcatcaaatggaggg
ttaaatccaagcactttgaattcaaatggcaaccatggtgcctggtccgtgttggagaac
agtggacatgccctgaaagggtccgtggggagtgggagtcctggcacaagcattcagtgc
agtaccataggtcagatggccaacagccagagtattaactcgaaagtgggtggctcagcc
cacggttcctggggaagccttcaggaaagttgtgattctgaagtaaatggtacaaggaat
gtttcattcagtgggcaacctcaaaaccttaacactgaaatgaatggaccaaataacact
actaactttatgacctctagtttaccaaactctgctggttcggtgcagatgaacgaactg
cccaacactgcagggcccggggcctggcgcgtgagcacaatgaatcattctcagattcag
gcctctccagtggcaaatggcacttccatctctcacctgagcaacggtgaggccaaaact
ggcggctcttatggtactacctggggtgcctatggttctagttactctggagacaaatgt
ccaggcccaaacagccaagctaatggtgacactgtgaatgcaactctaatgcagccgggc
gggagcgggcctggcagcactaactttcaaatcaacgggaataaaggcggaggggtgtgg
gaggcagggacagtcaactcccagaatgtgccgtggggaaacgggaatggtgcgagtgct
ggcgggagcagaagaggatggggcaaccctgcacaaaacactggcaccaacatttccaac
ggggaatggagcaaactgcctagcaatcagcattccaatgaaggtgtgaatggaaacagc
aggaagtttacaaatggatggaagtctactgaggaggatgatctcaacagccagagttct
gctgcctcccagatggctgagcagagcagcacatgggccaaaacaggtacgggggacagc
gaggggagctcagagagcaccgggtgccatgaagacagagcagctgtggaaggccagaac
cgagagaggaggaaagttgaccagcacacattactccaaagcatagtgaacagaactgac
ttagatccacgtgtcctttccaactctggttggggacagactccaatcaaacagaacact
gcctgggatactgaaacatcaccgaggggtgaaagaaaaactgacaatgggacagaggcc
tgggggggctctgtgacacagacttccagctcaggggggtgtgtggatagacctagccct
aataataacgatacctcatctgtatcggggtggggagatccaaagtctgctacaaggtgg
ggagactccaaagggtcaaacagccagggggggtgggaagaagattctgctgctacagta
atggtcaagagcaatcaatcatggggaagtggcaaagaggaaaagtcatcctggaatgac
acaccgaagatgaagcagggatggggagatggacagaaggccagccagggttgggcagtg
tctgctggtgatagctggggtgaaaactctagaagtaaccattggggtgaggcaaagaaa
tccagttccggaggtagcaacagcgacaggtccgtgtctggttggaatgagccaggtaaa
tcaaattctgttacttggggaggcaataatgcaaccccaaacaactcttcaggatgggat
gagcctgcaaagtctaatcagaaccagggctggggagaccctccgaaatccaatcagcct
caagtctggggggactcgtcgaagccagtcaattctcctgagtggaacaaacaagatgtt
ggctcttggggagccccgtctgccgcgaacaaacccccggggtctggctggctggggggg
ccaatgccagccccagcaaaggaggaagagcccacgggctgggaggagccatcccccgaa
tccatacgccggaaaatggagattgatgatggaacttctgcttggggtgatccaagcaaa
tacaactacaaaaatgtgaatatgtggaataaaaatgtcccaaacagtagcagcagttca
gaccagcaagcacaggtacatccgcagctactgtcttcaagtgccatgtctagcaaggag
agcagttcgggttctggttggggagagccttctactccagccactactgtagataacggg
acttcagcgtggggtaagcccatggacactggtacgagctggggagagcccgtcagcgat
gcaggaggcacctctggctggggaaacgcttctcttgggcagcagcctccaaataaacct
gggcctaaatctatgcaagatagttggtgtggagatgatatgccattgactggcagtcgt
cagaccagctgggaggaagaggaggatgttgagattggaatgtggaacagcagttcctca
caagaagctaacccatcgttaaactggccaccctacatgaaaaagatgcccacaaaggga
ataatgaaaggtggaaataagcaagatgaaacatggatcaatccattcattaagcaattc
acaaatctcagtttttcaagagaatcaccagaagaaaccatacagagcaataagatggac
atgtctggagggttactgcaggacaagcggatggagatggacaagcacggcctgggcgtg
ggagattacaatcgtgtggttggcaaaggccctggttctcgtccccaaattcccaaagag
tcttccatggatcgcggtccttacttcgataaggatggcattgtagcagacgagtcccaa
aacatgcagtttatgtccaatcaaaacatgaagcttcccccttcaaataatgcactacct
aaccaagccctgggctcccttacagggctgggtatgcaaagcttgaattctgttagacag
aatggcaatcccagtgtgtttggtgttgggaatatagcagcacagcccaggagcatgcag
cagcctccagcacaacctcttaattcatctcagcctaatccacgtgctcaagtgcctcct
ccattactatcccctcaggttccagtatcattactgaagtatgcaccaaacagcggtggc
ctgagcccactttttggcccacaacaggtagccatgttgaatcaactgtcccagttaaac
cagctttctcagatctcccagttacagcggctgttggctcagcagcagaaggctcagcct
cagaggagcatgccttctgggggtcggcagcagcaggagcagcagggtcgatctcttagt
atgcagcaacagatgatgcaacagtcccgtcagcttgatccaaacctgttaatgaagcag
caaactccaccctctcaacagcagtcactccatcagccctccatgaaatccttccttgag
aatgtcataccccacgctactcctgagctgcagaaagggccgtcaccaatcaatgctttc
agcagcttccctataggaatgaactcaaacttgaatgtaaaccgggatatgagcagtatt
aaagagccacaatctcggctgaggaaatggactacagtcgacagcatttctgtgaacaca
tccttagatcaaaactccagcaaacatggtgctatttcaagtggttttaggctggaagat
tctccgtttgttccttacgactttatgaacagcagtaattcgccagccagtcctcccgga
tccattggggacggctggccccgtgccaaatcgcctaatggctctagcagtgttaactgg
cccccagagtttcgccctggtgagccatggaaaggttatccaaacatcgaccccgaaact
gacccttacgtcactcctggcagtgtcataaacaatctctcaattaatactgtgcgggaa
gttgaccacctcagggacaggaacagtgggtcatcctcatctttgaacaccacgctgcct
tcaactagtgcctggtcatccattcgtgcctccaactacaatgtttccctcagcagtaca
gcacaaagcacttcagtagccagaaacagtgattccaaatcaacatggtctcctggatca
gtcactaacacctctctggctcatgagctgtggaaggtccctttgccacctaaaagcatc
actgctccgtcccgcccacctccagggctgacaggccagaaaccacccctgtccacttgg
gataattcccttcgtctgggtggaggatggggaaattctgatgccagatacacccctggt
tcaagctggggtgagagcagctcagggagaataacaaattggcttgttctaaaaaacctt
acacctcagatcgacggctcaaccctgcgtactctgtgcatgcagcacggcccactaata
acattccacctgaacctcccacatggtaatgctttggtccgttacagttcaaaagaagag
gtagtgaaggcacaaaaatctctgcacatgtgtgttttagggaacactactattcttgct
gagtttgccagtgaagaggagattagtcgcttctttgcacaaggccagtccctgactccg
tctcctggctggcaatctctgggatccagccagagccgactcggatccatcgatggttcc
cattcgttctcaaaccgtaatgatctaaatcactggaatggtgctgggctgtcgggaact
agcagtggagaccttcatggcacttcactttgggggagccccaactattccacgagcctg
tggggtgccccgagcagcaatgacaccaggggaattagcagcccatcccccatcaacgct
ttcctttctgttgaccacctgggtggaggtggagagtccatgtaa |