Corvus brachyrhynchos (American crow): 103615493
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Entry
103615493 CDS
T08418
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
103615493 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cbrc01001
]
103615493 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cbrc04054
]
103615493 (CIITA)
Enzymes [BR:
cbrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
103615493 (CIITA)
Protein kinases [BR:
cbrc01001
]
Serine/threonine kinases: Other
TAF1 family
103615493 (CIITA)
Pattern recognition receptors [BR:
cbrc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
103615493 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
LRR_14
Motif
Other DBs
NCBI-GeneID:
103615493
NCBI-ProteinID:
XP_017589742
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MNTTVILGLLEGRFLLVFLFGIPPLSVLILVISSFLLSLSVSPGQGWQFSSFFGTESRVI
EQELSTFLRQRQTMDSVFVPENGYLDLLHSDIDPLHLCAFLDPKPSGDEEGDFSTDLEVD
ASSYEQLNNVDFPCENGDALYPCSNTTDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILD
DIAAENTEKFPDIKMQTCLKRTFLGSAESYCDASEPKYKKIVEVPAVSAGDGSFFAMPFN
SHPVSCTSLTNQHMSFSVPAAHGLERSFIISGLSEPLTSECLPLGMTGYQENPGFAGPPQ
QIFNFVLENATSDVIVYPVLTSSMETFVSPSFPVNLCGLEKSQKVQDSIIPSKEPFKRPE
QVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDGTLVQSQTETKTGKNGAKAIEKELVT
CNLQDKEKTAIDRSQIFQIPPHKDLETXXXXXXXXXXMGKSILIQKICQDWSNGEFSQFE
FVFWFDCKQISLPEKQYSLKELLLEFFVKPQEGSTEIFEYILQNPTKVLLVFDGFKGLHD
HENSPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLFTARPKDKMYQCMSKVDKTIEI
VGFSPQQRELYITKYFEESPYCDSALNLIKECEYLFSHCYSPVMCRFVCFLCETVLEMGE
QSLPSTLTEVFLKFFQQKIMLMQTDVTTTQNQESLATLARIAWCLGEKHQSTMKSDLLPS
KEVKEFALKYGFFLPFALPRHSDSEEEEFGSTFSDFAIQNFLCALHLLLAEELKDKNLTK
YLSFLSKKKKPYNWLDLMPRFLAGLMFLQDDSYFCSLSNEDAKQSTKKQKTLLKYIRRLQ
INTLCPERLLELLHCVYETQNNYLLQHVALRLEPYLSFLGIVLTPPDVHVLHSILKRSRK
EFSLDLRNSGIDMQGLQALVSLRNVTSFRASLSDTVGLWKSLEQTKDYELLKASTEKFVL
DPFKAKTMKDISDLSDLVEMQEKMMNCVQGASGCTRYEIPAIRNLRKLEFALGPACGLQG
LLKLVKILAAFPSLRHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKITDLGA
ENLATALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQLT
DSLRKCPHIKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaacactacagttatactggggctgctagaagggaggttcctcttagttttcctcttt
ggaattccccctctgagtgttctgattcttgttatttcctcctttctactgtcgctttct
gttagccctgggcagggctggcagttctcatcattttttggtactgaatccagagtgata
gagcaggaactgtccactttcttaagacaaagacaaaccatggattcagtatttgtgcct
gaaaatggctaccttgatttactgcacagtgatatcgatcccttgcatctgtgtgctttc
cttgatcctaagccatccggagacgaagaaggtgacttctctaccgatcttgaagttgat
gccagcagctatgaacagttaaataatgtggatttcccatgtgaaaatggagatgcgttg
tacccctgttccaacaccacagatgcatatgctaaaatagctgaattagtagaatatgtg
ctcaaggatcagcaggagaagcaggtcgaagacatttttgcagggaaccttattttggat
gacattgctgctgaaaacactgagaaatttcctgacataaagatgcagacatgtcttaaa
cgaaccttcttaggctctgcagagagttactgtgatgcttcagaacccaaatataagaaa
attgtggaagtccctgcagtgtctgcaggggatggcagtttctttgctatgcctttcaac
agccatcccgtgagctgcacctccctaactaaccagcacatgtccttttctgttcctgct
gcccatggactggaaagaagcttcataatttctggattgtcagaacctttgacctcagag
tgcctaccactcggtatgacagggtaccaagagaatccaggctttgcaggtcctcctcag
cagatatttaactttgttcttgaaaatgccacatctgatgttatagtatatccagtgctg
acatcttctatggaaacattcgtatctccaagttttccagttaatttatgtggtttagaa
aagtctcaaaaagttcaagattccataattccttctaaagaacctttcaaaagaccagag
caagtggaaactttctgttcatcacttaaggattatttccgagacacttgcaaatctgtg
accatggagcgggaagtaaatctggatcacctgttcattgatgggacacttgttcaaagt
caaactgaaaccaagactggaaagaatggtgcaaaagcaattgaaaaggagctggtaact
tgcaacctgcaagacaaggaaaagacagccattgatagaagccaaatatttcaaatccca
ccacataaagacttagagacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgggaaaa
agcattctcattcagaagatctgccaggactggtccaatggagagttttctcagtttgaa
tttgtattttggtttgactgcaaacaaataagcttgcctgagaagcaatacagcctgaag
gaactgctgcttgaattttttgtaaaacctcaagagggaagcacagagatctttgagtat
atattgcaaaatcctactaaagtccttctggtttttgatggttttaaaggattgcatgat
cacgagaattctcctcgttgctcagccagccagcctgaaaaggatttgtgcagtataaag
gagctgctttcaggactcatccaaaaaaagatactcaatggctgtactttattatttaca
gcaagaccaaaagacaaaatgtaccagtgcatgtccaaagtggataagactattgaaata
gtaggattttcccctcagcagagagaattgtacataaccaaatattttgaagaatcaccc
tactgtgatagtgcactgaatttaatcaaagagtgtgagtacttgttcagtcattgttac
agccctgttatgtgtagatttgtttgttttctctgtgagacagtacttgaaatgggagag
caaagtcttccttcaactcttactgaagtcttcctgaaattttttcagcagaagataatg
cttatgcaaacagatgttacaaccacacaaaatcaagagagtcttgctaccctagcacgt
atagcctggtgtcttggagaaaagcaccaaagcaccatgaaaagtgatctccttccttct
aaggaagttaaagagtttgctctgaagtatggttttttcctgccatttgcgctccccaga
cattcagatagtgaagaggaggaatttgggagcacattctctgattttgccattcagaat
ttcttgtgtgcacttcaccttttgttagcagaagagctcaaggataaaaatctaacaaag
tacctgtcttttctatccaagaagaaaaaaccttataactggttagatttaatgcctaga
tttttggctggtttgatgtttctccaggatgactcctacttctgctctctttcaaatgag
gatgcaaaacaatcaaccaagaagcagaaaacactcttgaaatacattagaaggctgcag
attaataccctctgtccagagaggttgctggagcttttacattgtgtttatgaaacacag
aacaattatcttctgcagcatgtggccttaagactcgagccatacttgtcttttctgggc
atagttcttacaccacctgatgtccatgtactgcattcaattttgaaaaggtcaagaaaa
gagttttccttggatttgcgaaacagcggcattgacatgcaagggctgcaagccttggtc
agcctaaggaatgtgacatcgttcagggcctccctcagtgacacagtcgggctctggaaa
tctttagaacagacaaaagactacgaactgctgaaagcatccacagagaaatttgttctt
gatccctttaaggcaaagacaatgaaggacatcagtgacctctctgaccttgtagagatg
caggagaagatgatgaattgtgtgcaaggagcatctggttgcacccgctatgaaattcct
gccatcagaaacctcaggaaactcgaatttgctctgggtccagcatgtggccttcaagga
ttgctaaaactcgtgaaaattcttgcagcatttccatctcttcggcatttagaccttgat
gctctgagcgaaaatggcataggagatgaaggagcaaaaagtctatctgaagtgtttcca
accctgacatcactggaaacattaaatttatcacagaataaaataacagacctgggtgca
gagaaccttgctacagctctcccttccttgtcctccttaaaaacgctaagcttgtacaat
aacaacatttgtgattttggagcagaaaatctggcgaaagttcttcctgcaatgacatct
ttaagagtgctagatgttcagtataacaaaataactggtgttggagcccagcagctgact
gacagcctacgaaaatgtccccatataaagaacttggtgatgtggaatcccacaattccc
tatggagttcttgaacaccttcaccagctggactccaggatcagtgtgtag
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integrated database retrieval system
