Corvus brachyrhynchos (American crow): 103616746
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Entry
103616746 CDS
T08418
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103616746 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbrc03021
]
103616746 (PCF11)
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103616746 (PCF11)
Transcription machinery [BR:
cbrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103616746 (PCF11)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103616746 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
103616746
NCBI-ProteinID:
XP_017591335
LinkDB
All DBs
Position
Unknown
AA seq
1731 aa
AA seq
DB search
MGASRSTPHYQPGDIAEPLLPAQSLPSQHRAPRAPASSAGSSEAREDACRDYQSSLEDLT
FNSKPHINMLTILAEENVPFAKDIVSLIEAQIAKAPASEKLPVMYLMDSIVKNVGREYLT
AFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYALDVRVNSLDPAWPIKPL
PPNVNTSSIHVNPKFLNKSPEESNAPTSAVTSGASTPPAVPEIQKNLTQEQLIRQQLLAK
QKQLLELQQKKLELELEQTKAQLAVSLSVQHGSSSIASVPAPSKQHISPTPHMTVKPPHQ
TAVQSEKNKPSPSPPLHDIKIVNRDPRLNRMGQHSSHTKDQSHRKEFSASVTSQSETKAN
KTAQVEKQNSTRSEKSKASEKTQKKELEQSKAKSKSPSPLKNKLPDTKDSKSQECESTKV
SDISKRDPRLKRHLQDKSEGKEEEVKEKRRSTEKKEKEEHKTCEHRPVGSRNKVINGAVQ
KQDTTTEESEKQGGKQGRSSSRKRSRSRSPKARSPSTHSPKRRERRSPKRRLRSLSPTSS
TPKIGKIRQIGPKQSHVEEGTQAARDERNSNKRNVKQEVRDPRRLKKAQEERPQETATQH
SAKASPDPKENAENWQGSKSGKRWKSGWEESKNSQQNDEHQALVKSPHQRHRENWPASKG
ILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANDRLTSGEITQDEFLMVAHQIRQ
LFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAKLKRTQVQHSLSRLDLLD
PEDILDYHIPDALLSGIECEQAKAKRGVQFDRKEAFAERSRRHSPVSGTTRPFAENLSPL
ESRRRLEDQRATKGARGSDPYDSWGESDEFRDALRQQGKSTAEFQKIDGDALCRFDNREE
RQLLGQAGVREEPRSPFSERFKRARYEDPEKAPFPESPGSRFGGIEAKQRISALMEDRPL
FDGSPRPTAARVGVDGQGSPFVDGPAAGSSSRIDGPAGQAAMRFEGPLVGAGASQFDGPM
AGAGGAGALRFDGPPGQLAGALRFEGPPGQVGGGGPLRFEGPLGPLRFEGPAGQPVGGPR
FEGPGVGLRFEGPHGQPSGGLRFEGPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGG
LRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGPSSGGLRFEGPHGPSGGGLRLEGPR
GQPGLGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDGCHGAGFDGQPGQLSLLQRFDGIHG
QPGPRLAPGQQAQARFETAIPQRFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSP
YGQGGPFVEHPGQGYNGPAHGMQFQRPDIFDGSPGPNFNGPAGPGGQNFPLRAAGHYFEE
KGLQGPQYGNFSNMPMGSNQVSLMSAQPGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNH
LGQVDVNELFAKLLKTGILKLSKTDSTSAQANETSAQPTAEEEDDDQNEDQNVPDLTNFI
VEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHR
RWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVES
CEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPSENP
LNIMLDIVKQETEESCDSPKIKEEPEDTPPACAEESTPASTEIKTEPEESV
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgggggcctcacgatcaactcctcactaccaacctggtgacattgctgagccactgctc
cccgcccaatcgcttccctctcagcacagagcacccagggccccggcgagcagcgctggc
agcagcgaggcccgggaggacgcgtgccgcgactaccagtcttcgctggaggacctgacg
ttcaacagcaagccgcacatcaacatgctgaccatcctggccgaggagaacgtgcccttc
gccaaggacatcgtctccctgatcgaggcgcaaatcgccaaggctcctgcatcagagaag
ctacccgttatgtacctaatggattccattgtcaagaatgtgggaagagagtatctcact
gcatttactaaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaat
actaggaaaagtttatttaaattacgctccacatgggatgatatttttcctttgaagaaa
ctatatgcacttgatgtcagagtcaactcattagatcctgcctggccaattaaacctctg
cccccaaatgtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgcca
gaggaatctaatgcacctacctctgctgttacttctggtgcctctactcctccagctgtt
cctgaaatacaaaagaatttgacacaggagcaactgataaggcagcaattgcttgcaaag
caaaagcagttgttagaacttcagcaaaaaaaactagagctggagctggaacagactaaa
gcacagttggctgtatctcttagtgttcagcacggatcatctagtatagcttcagttcca
gcaccttccaagcaacacatttctcccacacctcatatgacagtaaagccacctcatcag
actgctgtgcaatctgaaaaaaacaaaccatccccaagtcctccacttcatgatatcaaa
atagtaaacagggatcctcggcttaataggatgggccaacattcttctcatactaaggat
caatctcataggaaagaattttcagcaagtgtaaccagtcagtctgagaccaaggcgaac
aaaacagcacaggttgaaaaacagaactcaacaaggtcagaaaaatcaaaagcaagtgaa
aaaacccagaagaaagaacttgaacagtccaaagcaaaatctaaatcgccatcccctttg
aaaaataagctgcctgatactaaagatagtaaaagccaggaatgtgaaagcactaaggtt
tctgacatcagtaagcgggatccaagactgaaaagacatcttcaagataagtcagagggg
aaggaagaggaggtcaaagaaaagaggagaagtacagagaagaaggaaaaggaggagcat
aagacatgtgaacatagaccagtggggagcagaaataaagtgattaatggtgctgttcag
aaacaagacacgactacagaggagtcagaaaaacagggtggaaaacaaggaagatcaagt
agtagaaaacggtcacgatcacgctctcctaaggcaagatcaccatctacacattctcca
aaaagacgagagaggagatcacctaaaagaagacttcggagtttatctcctacttcatca
actcctaaaattggaaagatacgtcagataggccctaagcagtctcatgttgaagaaggc
acacaagcagctagagatgaaagaaattctaataagagaaatgttaaacaagaggtgcgt
gatccaaggagattgaaaaaagcccaagaagaaagaccccaagagacagccacccagcat
tctgcaaaagcttctccagatccaaaggagaacgcagaaaactggcaaggatccaaatca
ggcaagaggtggaaatctggttgggaagaaagtaaaaactcacagcagaatgatgaacac
caagcacttgttaaatcccctcaccaaagacaccgggaaaactggcctgctagtaaagga
attttatcaccccgagcaccaaagcagcagcaccggttaagtgtggatgccaatttacag
attcccaaagaattgacatctgcaagtaaaagagaattacttaagaaggctaatgaccgc
ttaacatctggtgaaataacacaggatgagttcctcatggtagctcatcagatccgacag
ctgttccagtaccaggaaggaaagcacagatgtaatgtctgggatagccctacagaggaa
aaatgtggtttaaaaaagaaacctcttctgtcggatgcagaattaacatattatgaacat
aaagctaaactaaaaaggacacaagttcagcattcattgtcaaggcttgatctgttggat
cccgaggatattttggattatcatatacctgatgcattgctttctggaatagaatgtgag
caggcaaaagccaagcgtggggtacagtttgacagaaaagaagcatttgcagaaagatca
aggagacattctcctgtaagtggcactacaagaccttttgccgaaaacctgtcaccactt
gagagtcgacgaagacttgaagaccagcgtgctactaaaggagcaagaggttctgatcct
tacgacagctggggagaatcggatgaatttagagatgctctcagacaacaggggaaaagt
acagcagagttccagaaaatagatggagatgcactctgtaggtttgataatcgtgaagaa
agacagcttcttgggcaagctggtgttcgagaggaaccaaggtcaccattcagtgaacgt
ttcaaaagagctaggtatgaagatccagagaaagcaccatttccagaaagtccaggatca
agatttggaggtattgaagcaaagcagaggataagcgcactgatggaagacagacctctg
tttgatggctcacctagaccgactgctgcaagggttggagtagatggacaaggaagtcct
tttgttgatggtcctgctgctggttcaagttccagaattgatgggccagctggacaggct
gctatgagatttgaggggcctttggtgggggcaggtgcatctcagtttgatggaccaatg
gcaggagcagggggagctggagccctaagatttgatgggccaccagggcagctggcaggg
gccctgaggtttgaaggacctccaggccaggttggtggaggaggtccactacggtttgag
ggacctcttgggcctttgcggtttgaggggcctgcggggcagcctgtaggtggtcctaga
tttgaaggacctggagttggtctcaggtttgagggtcctcatggtcagccttcaggtggt
ctcaggtttgagggacctcatggtcaacctatggggcctcggggtcaaccagggggtggt
ctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaaccagggggtggc
ctcaggtttgaggggccacatttacagccattggggccccatggacaacctggaggtggc
ctcagatttgaggggccacatggtcagcccatggggccacatggaccgtcaagtggtggg
ctcaggtttgaggggccacacggaccatcaggtggtgggctgagattggaaggaccacgt
ggtcagccaggtctaggtcctaggctgattgatggaccagtacaccagggagctggtgga
cttagatttgatggtcctcttggtcgggctggtccgagatttgatggctgtcatggagct
ggatttgatggtcagcctggacagctgtctctcctgcaaagatttgatggaattcatgga
cagcctggtccaaggttggcacctggccaacaggcacaagcaagatttgaaacagccata
cctcaaagatttgatggacctcaccagccagcttctaggtttgacttgccccttggcctt
cagggtgcacgttttgaaaatgtagctaaccatcctgcctcaagactagaaatgtcacca
tatggacaaggtggtccttttgttgaacatcctggccagggctacaatggaccagctcat
ggaatgcagttccagagacctgatatatttgatggttcacctggaccaaatttcaatggg
ccagctggcccaggaggacagaacttcccactgagagcagctggacattactttgaagaa
aaaggtcttcagggtcctcagtatggaaatttcagtaatatgccaatgggaagtaatcag
gtttctctcatgtctgctcaaccaggaccttatggccaaggtcagcagtatttgccaaat
cctggaagttttgtccagaaccctgcaggagcccttccccattcatatcctgataaccac
cttggacaggttgatgtgaatgaattgtttgctaaactgctgaaaacagggatcctcaaa
ttgtctaaaactgattccacttcagcacaagcaaatgaaacatcagcccagccgactgct
gaagaagaagatgatgatcagaatgaagatcagaatgttccagacctcactaacttcata
gttgaagaacttagacagcgttatgatagtgttataaatcgactgtacactggaattcag
tgttactcctgtggaatgaggttcactacttcacagacagatgtctatgcagatcattta
gattggcattaccgccagaaccggacagaaaaagatgttagcagaaaaattacacacagg
agatggtactacagtttaacagactggattgaatttgaagaaatagcagatctagaggag
cgtgctaaaagccagttctttgaaaaagctcacgaagaggttgtgttgaagacacaggaa
gctgcgaaagagaaggagtttcagagtgtcccagctggaccagctggagcggttgagagc
tgcgaaatttgccaagaacaatttgaacagtattgggatgaggaagaggaagagtggcac
ctgaagaatgctatcagggtagatgaaaagatttaccatccatcttgttatgaagattac
caaaatacatcatcattcgattgcacaccgtctcccagcaagactccttcagaaaatcca
ctaaatataatgttggacattgttaaacaagaaacagaagagtcctgtgactcacctaaa
atcaaagaagaacctgaggacacacctccagcctgtgcagaagagagcacacctgcatct
acagaaatcaaaacagaacctgaggagtctgtttaa
DBGET
integrated database retrieval system
