Corvus brachyrhynchos (American crow): 103617691
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Entry
103617691 CDS
T08418
Symbol
HELZ2
Name
(RefSeq) helicase with zinc finger domain 2
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103617691 (HELZ2)
Enzymes [BR:
cbrc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
103617691 (HELZ2)
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103617691 (HELZ2)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103617691 (HELZ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_19
AAA_30
ResIII
AAA_22
UvrD-helicase
nSTAND3
PhoH
AAA_16
UvrD_C_2
DEAD
SLFN-g3_helicase
zf-met
Bac_DnaA
zf-C2H2_jaz
Motif
Other DBs
NCBI-GeneID:
103617691
NCBI-ProteinID:
XP_008634243
LinkDB
All DBs
Position
Unknown
AA seq
2821 aa
AA seq
DB search
MPTANGPKVPLSSLQQQLELLLVCSKCSVKENEITYHPREVEHNCMYEILLARCRSRWST
AWRKVSRRPGFPNPARYAVCRYYVVGLGCSRHKNQCTFAWSAEEAMVWNFEREHQLERRW
LKAAVLQAQLGGHPATAPHTMASAASEIINEFGGCFPDICKRCFFGCPQRITVGGHRQRC
PSHHTWDPLLVHVVLDSQKKQQYTAIRPCPKFMETLSYCWFMSQGRHCRHGLQRCHYAHS
DVEMAVWEAEREQGLQRSDLLPPVGTGSTNGEPAAPAPVHFYCRICLVTVSSQESFENHC
SSIEHVQMLSADSSMQWVHRAPPLGLTKFSLCSRADVCEMGNSCTKAHSKEELQEWIQRV
KVSMKKKKQALKDGLLSYQDRLIAEYRMCSNEVLIMAEHIEGVQVACEQPLHVQLEDRKK
KYQWRFKVHSQMHLQHVALLKREPGVNFYFSGNGLSRGLQYICGDHVATLSSSPHTALVE
VSMECCTLGIFEQWVVFDFGKRPVLMQKIKVKVGRQETPLHIPSTRESTRPVNFVRWNRG
NRIIVPSVPKTGEDVDLLAKYKPPALALDYQSESSAVVPITRLNYRERMHSFLFREEEAE
QALIAKLNLRVLISLTPMLQSFSMGVKFALSGELFAEVPTPYNLSPDTDEGYLLSRSVPT
AFLALDPPVDNRVYEVFVEHKATTEKTLWLQIPRRCCSELNFKANTSHKVEIQFQIDQLL
FRQWHQAVDCLLDEKLVLPDVASCSIPYSPGSPQKGNSKQKQAISFITGQRTTKRQVPPL
LIYGPFGTGKTFTLAMATLEILKQPNTRVLICTHTNSAADIYIREYFHNYVTMGHPWAVP
LRIISTDRSVNMMDPITQMYCCLSPDQRSFRHPTQAEIDKHHIIITTSMLSKNLRVPPGY
FTHIMIDEAAQMLECEALVPLSYATFETRIVLAGDHMQITPKLFSVGSGQSADHTLLNRL
FQFYQRERHEVAKKSRIIFNENYRSTAGIIEFVSKHFYIGNGNAIQASGNIPPHPEIYPL
VFCHVSGVAERDISMISWQNVSEIIQVIEKVKEIYQRWPDEWGVRDLKKICVVSHGMQVS
ATRQELRKKQLQDVVVENYENLPGREFRVIIISTVHTSKSLRVSASHHLEFFNEARVLNT
IMTRAQSLVVAVGDAVALCSHGQCSKVWKRFIQQCIDKGSIFPENLTMAQIKQAACDKDS
WSRSPEGNEEDSDTDSSSSEGESMNADDPILQELLDESKNVLVTVSEEGLLNVKSEASNQ
WKDKWEYVNFSSQMMQQYLHMHPKMYKRCELIKEGFDRASAFTLNDSPAMNIQIKGRVNC
GTAFTGDEVLVEILQNSTGDSSSHRPQGRVVGILKRGERERTFICMMDEFDPRVMIPIDP
TVTKIFVPGLKEKPNVIPIRRFVNGKYRVVSCEKINQETRRCQFFCVQVISWREGFYYPL
GIITEILQAALTLEEGLKILALEYGLENKYPAAVTREAAKYTSNNNINLTKETLKDCRSY
MTFTIDPQGARDLDDAISVRDLGRHYEIGIHIADVAAIVPKGSALDLEAKKRGVTYYAPK
QEPLCMFPPKISQDVCSLLPQKDRRVISLLVTIEKETDQMLKGVFTISVIRSDRQLSYEE
AELCIKNCYKGAAKALRFDTLEDCIAVAYHFSRIHRKFRLQEDCFYDRLDEESSPGNRGS
HQMIEELMIMFNSFVAEFLTNQEVTRNVTPLRCQCEPSLTQLSLMKNKYSHIIPLSIHLL
HHLGEMPPGQDSPKNVEFSLLGPIWKHLQLAANAHDFQKMLDLVVTDDIHPKLAPVTLDF
RRMLSRSYFCRSNSTVQSKAGHYSLHVDSYTWASSPIRRYMDVVVQRHLHSVLRKKPLIY
SVDDIEFLCHDFNRKNTQAMTYEKRAHSLQMASQLKDQVLQKIAFVVDIEQMSRFFKALF
PLNNESLPDPQRISYRSLQLIEQPVFIQQRNSIRLTWKRRMYSAETKEQSLREGPLCDQS
VTLFRTQTWQDVLTAIRNEEFDRAASLLRQSKELYQRHIGWVRKSSCSHYMELSLELSAG
DALRFQLTTDVSQGFLVPFVQLWCVTQGFEVCLQHTEKPIDCFSAYATLQSKDRYKSTTE
YNKVWMPMSAMESAVCAVAENDSIVLCDIKIKWAKQRTSKGQLQGSFVLNKKWLEECSIE
VDFFHCYLCIRLGGLKLPKSLQSDEECLSHGLQNLSLLDNGEPENKLVVDPDTYTWVAHG
VTEEFNDDEKSDRSGQQTMNFYIHYMSMENIPVEISQESARFTVELIPKMLPDIRKEKAL
WRLKYASELAKSIALGHEPPQKVTKSRFLQQKSFDIPGSNWKLNTSQTQAVLDALRKPFT
LIQGPPGTGKTVVGTHIVYWFHKLNEESVEKDKTPCLEEEKHDRRKCILYCGPSNKSVDV
VAEMLMKTKNLKPLRVYGEAIEAMEFPYPGSNRNISRKSLRDAKPKRELSKIILHHRIRR
APSKFWQEICHFDTRVRNGEEITEEETKEYKGWLSQGRAYQLACHDVILCTCSVASASIL
EQQLDVRQIIIDECAMSTEPETLIPLVCHHRAEKVVLLGDHKQLRPVVNNDVCKSLGMET
SLFERYQGQAWMLDTQYRMHKGICEFPSQEFYERRLRTWPQLPEKPSALHHKDNNCCPII
FGHIEGKEHSLMIATEEGNENSKANLEEVAQAVRIAKQLTLDGTIRPESIAILSPYSAQV
SEINKSLQREGIRGVTVCTIMKSQGSEWRYVILSTVRSCPRSEIDRKPTKSWQKKYLGFV
TNPNQVNVGITRAQEGLCIIGNRYLLECNPLWGRLIQHYHKHNCCTAAQEIRVRRTATLC
R
NT seq
8466 nt
NT seq
+upstream
nt +downstream
nt
atgccgacagccaacggcccaaaggtgccactgagcagcctccagcagcagctggagctg
ctcctggtctgctccaagtgcagcgtgaaggagaacgagatcacctaccacccgcgggag
gtggagcacaactgcatgtatgagatcctgctggcgcgctgccgcagccgctggagcacg
gcatggaggaaagtgtcccggcggcccggcttccccaacccggcgcgctacgctgtctgc
aggtattacgtggtggggctgggctgcagcaggcacaagaaccagtgcaccttcgcctgg
agcgcggaggaggccatggtctggaacttcgagagggagcaccagctggagcggcgctgg
ctgaaggcggcggtgctgcaggcgcagctggggggccaccctgccactgccccccacacc
atggccagtgctgccagtgagatcatcaacgagttcggggggtgcttcccggacatctgc
aagcgttgttttttcggctgcccccagcgcatcacggtgggcggccacaggcagcgctgc
ccatcccaccacacctgggacccgctcctggtgcacgtggtgctggatagccagaagaag
cagcagtacacggccatccggccctgccccaagttcatggagaccctcagctactgctgg
ttcatgtcccagggccggcactgcaggcacggcctgcagcgctgccactacgcccacagt
gatgtggagatggccgtctgggaggccgagagggagcagggattgcagcgctccgacctg
ctgccacctgtgggcaccggcagcaccaatggcgagccggcggcgcccgcgcctgtgcac
ttctactgccgcatctgcctggtgaccgtcagctcgcaggagagctttgagaaccactgc
tcctccatcgagcacgtgcagatgctctcggccgacagctccatgcagtgggtccaccgc
gcaccaccgctcgggctgaccaagttctcactgtgcagcagagcggatgtgtgtgaaatg
ggcaacagctgcaccaaggctcattccaaagaggaactgcaggagtggatccagagggtg
aaggtttccatgaagaaaaagaagcaagccctgaaagatgggctcttgtcctaccaggac
aggctcattgctgagtatcggatgtgctccaacgaggtgttaattatggctgagcacatc
gagggtgtccaggttgcgtgtgagcagcctctgcacgtgcagctggaggacaggaagaag
aaataccaatggaggttcaaggtccactctcagatgcatctgcagcacgtggccctgctg
aagcgggagcctggagtcaacttctacttctcggggaatgggctttctcggggcctccag
tacatttgtggggatcacgtggccaccctgtcctcctcgccccacactgcgctggtggag
gtcagcatggagtgctgcaccctgggcatcttcgagcagtgggtggtcttcgacttcggc
aagcgccccgtcctcatgcagaagatcaaggtgaaggtgggccggcaggagacccccctg
cacatccccagcaccagggagagcacccgccccgtcaactttgtgcggtggaatcggggt
aaccggatcatcgttcccagcgtgccaaagactggtgaagatgtggatctgctggccaag
tacaaacctcctgctctggcactggattaccaaagtgagagtagtgcagtcgttcccatc
acccggctcaactatcgggagagaatgcacagcttcctcttccgtgaggaagaagctgag
caggctctgattgccaaactcaacctgcgtgtgctcatctcgctgacccccatgctgcag
agcttctccatgggggtgaagtttgctctctctggggagctgtttgctgaagtgcctacc
ccttacaacctctcgccggacacggatgagggatacctgctgagcaggtctgtgcccacc
gccttcctggcacttgacccacctgtggacaatcgggtttatgaagtttttgtggagcat
aaagccaccacggagaagaccctctggctacagataccaaggaggtgctgctcggagctg
aacttcaaggcaaacacctcccacaaggtggagatccagttccaaatcgaccagctgctg
ttccggcagtggcaccaggctgtggactgcctgttggatgagaagctggtcctgccagat
gttgccagttgctccatcccatactctcctgggtccccacagaaaggaaatagcaagcag
aaacaagccatctccttcatcacgggccagcggaccaccaagcggcaggtcccacctctg
ctcatctatgggccttttggcacagggaagacgttcaccttggccatggccaccttggag
atcctcaagcagcccaacacacgggtgctgatctgcactcacacgaacagcgctgctgac
atttacatccgggagtattttcacaactacgtgaccatggggcatccatgggctgttccc
ctgcggatcatctccaccgaccggtccgtcaacatgatggaccccatcacccagatgtac
tgctgcctctcaccggaccagcgctcgttccgccaccccacgcaggccgagattgacaag
caccacatcattatcaccacctccatgctatccaagaacctgagggtccccccaggctac
ttcacccacatcatgatcgacgaggccgcgcagatgctggagtgcgaagctttggttcca
ctctcctatgccacttttgagacccgcattgtcctggctggggaccacatgcagataacc
ccaaagctgttctctgttgggagtgggcaatctgctgatcacaccctcttgaaccggctc
tttcagttctaccagagggagaggcatgaggtggccaagaagagcaggatcatcttcaat
gagaattatcgttccactgccggcatcatcgagtttgtctccaagcacttctacatcggc
aatggcaacgctatccaagccagtgggaacatcccaccccatcccgaaatttatcccctc
gtgttctgccacgtgtctggcgtggctgaaagggatatctccatgatttcttggcaaaat
gtctctgagataatacaagtgattgagaaagtgaaggagatctatcagaggtggccagat
gagtggggtgtccgggatctgaagaagatctgtgtggtctcccatgggatgcaggtttct
gcaacaagacaggagctgaggaaaaagcagctacaagatgtggtggtggaaaactacgaa
aatttgccagggcgtgagtttcgggtcatcatcatcagcacggtccacaccagcaagagc
ctgcgcgtttcagcctcccaccacctcgagttcttcaacgaggccagagtgctcaacacc
atcatgacccgggctcagtcactggtggttgcggtgggggacgccgtggccttgtgctcc
catggccagtgcagcaaagtgtggaaacggttcatccagcagtgcatcgacaaggggagc
atcttcccagagaacctgacaatggctcagatcaaacaggctgcatgtgacaaggacagc
tggagcaggagcccagagggtaacgaggaggacagcgacacagattcctcaagctctgag
ggcgagagcatgaatgctgatgatcccatcctccaggagctcttagatgagagcaagaac
gtgctggtgacagtatctgaggaagggctgctgaatgtgaagtccgaggcttcaaaccag
tggaaagacaagtgggagtatgtcaacttctcttctcagatgatgcagcagtacctgcac
atgcaccccaaaatgtacaagaggtgtgagctgatcaaagaggggttcgacagagcttct
gccttcaccctcaatgactcccctgccatgaacatccagatcaaaggcagagttaactgc
gggacagccttcactggggacgaggtgctggtggaaatcctgcagaacagcacaggcgac
agcagcagccaccgcccacaggggagggtggtgggcatcctgaagcgtggtgagagagaa
cggaccttcatctgcatgatggacgagtttgatccccgtgtgatgatacccattgatccc
actgtcaccaaaatattcgttccagggttgaaggagaaacccaatgtcattcccatccgc
aggtttgtcaatggaaagtacagagtggtcagctgtgagaagatcaaccaggagacaagg
aggtgccagttcttctgtgtccaggtcatctcctggcgggaagggttttattaccctttg
gggataataacagagatcctacaggcagcactgactttggaagaaggcttaaagatcctt
gccttggagtatggtttggagaacaaatacccagctgctgtcacccgagaggcagccaag
tacacctccaacaacaacataaacctcaccaaggaaactctgaaggactgtcggagttat
atgaccttcactattgacccccaaggtgccagggatttggacgatgctatcagcgttagg
gatctggggcgtcactatgagattgggatccacattgcagacgtggctgccatcgttccc
aaaggcagtgccttggacctggaagcaaagaagcggggtgtcacctactatgctcccaag
caggagcctctgtgcatgttcccacccaaaatcagccaagacgtctgcagcctcctgccg
cagaaagatcgacgggtgatctccttgttggtcaccatagaaaaggagactgatcagatg
ttaaagggagtcttcaccatctccgtgatccgctcggacaggcagctgtcctatgaggag
gcagagctctgcattaagaactgctacaagggagcagcaaaggcccttcgttttgatacc
ctggaggactgcatagctgtggcttatcacttctccaggatccatcggaagtttcggctg
caggaggactgtttctatgaccggctggatgaggaaagttccccaggtaacagagggtcc
catcagatgatagaggagttaatgatcatgttcaatagtttcgtggccgagttcctcacc
aaccaggaggtgaccagaaatgtcactcctctccggtgtcagtgtgagccaagtcttaca
cagctgtcactcatgaaaaacaagtacagccacatcattcctttgtccatccatctcttg
catcatctgggagaaatgcctcctggacaagactcccctaaaaatgtggagttcagtctt
ctgggccccatctggaagcacctgcagctagctgctaatgcccatgacttccaaaagatg
cttgacctcgttgtcactgatgacatccacccaaagctggcccccgtgaccctggacttc
aggagaatgctcagccgctcctacttctgtcgctccaactccactgtccagtcaaaggca
ggccactactccctgcatgtagactcctacacctgggcctcctctcccatccgccggtac
atggatgtcgtggtccagcggcaccttcattccgtgctccgcaagaagcccctcatctat
tctgtggatgacatcgagtttctctgtcatgacttcaacaggaagaatacccaggccatg
acatatgagaagagagcccactccctgcagatggccagccagctgaaggaccaagtcctg
cagaagattgcttttgtggtggatattgaacagatgagcaggttttttaaagccctgttt
cccctgaacaatgagagtcttccggatccgcagagaattagctacaggtcccttcagctg
atagagcagcctgtgttcatccagcagcggaacagcatcaggctgacctggaagagaagg
atgtactctgcagagacaaaggagcagagcctgcgggaaggacccctctgcgaccagagt
gtcaccctgttccgcacccagacgtggcaagacgtgctcacggccatcaggaacgaggag
tttgacagggctgcgtccctgctgcggcagagcaaggagctgtaccagcggcacataggc
tgggtgcggaagagctcctgctcccactacatggagctgtccctagagctgagcgccggt
gacgcgctgcggttccagctcaccactgacgtcagccagggcttcctggtgcccttcgtg
cagctgtggtgtgtgacacaggggtttgaggtctgcctgcagcacacggagaagccgatc
gactgcttctcggcctacgccacgctgcagtccaaggacaggtacaagagcacgaccgag
tacaacaaggtgtggatgcccatgagtgccatggagtctgcagtgtgtgccgtggctgag
aacgactcgattgtcctctgtgatattaaaataaagtgggcaaagcaaaggacaagcaaa
ggacagctgcaagggagctttgtgctgaacaagaagtggttggaggagtgctccattgaa
gtggacttcttccactgttacctgtgcattcgtttaggtgggctgaagcttcccaagagc
ctccagagtgatgaggaatgccttagccatggcctccagaacctgtctttgcttgacaat
ggcgaaccagagaacaaacttgtggttgatcccgatacctacacgtgggtggctcacgga
gtcacggaggagttcaacgatgacgagaagtcagacaggtctggtcagcagactatgaac
ttttacatccactatatgtctatggagaacatccctgtagagatctcacaggagtctgcc
aggttcacggtggagctcattccaaagatgctgccagacatacgcaaagaaaaagcactt
tggaggctcaaatatgcctctgagcttgctaaaagcatcgcccttggccatgaacctcct
caaaaagtgacaaaatccagattcctgcagcaaaaatcctttgatattcccggcagcaac
tggaaacttaacacaagtcagacccaggctgttctggatgctttgagaaaacccttcacg
ctcatccaaggcccaccaggcacagggaagacggttgttggaactcacattgtctactgg
ttccataaactgaatgaggagagtgttgagaaggacaaaacaccatgcttggaagaggaa
aagcatgacaggagaaagtgcatcttgtactgtggcccatccaacaagtctgttgatgtt
gttgctgagatgctgatgaagacaaagaacctgaaaccactgagggtttatggggaggcc
attgaggcgatggaattcccgtacccagggagcaaccggaacataagccgtaaatcccta
cgggatgcaaagccaaaacgtgagctcagcaaaataatcctgcatcatcgtatccggcgg
gcacccagcaaattctggcaggagatctgtcactttgacactcgggtgaggaacggagag
gagatcacagaagaagaaacaaaggagtacaaaggttggctgtcacaaggtcgcgcgtat
cagctggcgtgtcacgatgtcatcctgtgcacctgctctgtggcatctgccagcatcctg
gagcagcagcttgatgtcaggcagataatcatcgatgagtgtgccatgtccacagagcct
gagacccttatccccttagtgtgccaccaccgtgctgagaaggttgttttgctgggggat
cacaaacagctgcggccggtggttaacaacgatgtctgcaagagtcttggcatggagaca
tctctctttgagcgctaccagggacaggcgtggatgctggacacgcagtaccgcatgcac
aaggggatttgcgagttcccatcccaggagttctatgaaaggcggctgagaacatggcct
cagcttcctgagaaacccagcgcgctccaccacaaagataacaactgctgccccatcatc
ttcgggcacatagaagggaaggagcactccctcatgattgctactgaggaaggaaatgag
aactccaaagctaacctggaggaagtggcacaggcggtgaggatagccaagcagctgaca
ctagatggcaccatccggccggagagcatcgccatcctgagcccctacagcgcccaggtg
tccgagatcaacaagagcctacagagggagggcatccgcggagtgaccgtctgcaccatc
atgaagagtcaaggaagtgaatggagatatgtgattctgtcaactgtacgctcctgcccc
cggtctgagatcgataggaagcccacaaagagctggcagaagaaatacctggggtttgtt
accaacccaaaccaggtcaatgttggcatcacacgagctcaggaaggactctgcatcata
gggaaccggtacctcctagagtgcaaccctttgtgggggagactgatccaacattaccac
aagcacaactgctgcactgcagcccaggagattcgtgtcaggaggaccgcaaccctctgc
cggtga
DBGET
integrated database retrieval system
