Corvus brachyrhynchos (American crow): 103617944
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Entry
103617944 CDS
T08418
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbrc03041
]
103617944
Enzymes [BR:
cbrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103617944
Spliceosome [BR:
cbrc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103617944
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
DEAD
AAA_19
OB_NTP_bind
Ank_2
HA2_N
nSTAND3
ATPase
AAA_22
PhoH
Ank_4
AAA_23
ResIII
AAA_29
AAA_16
ABC_tran
AAA_30
AAA_7
TagF_N
Motif
Other DBs
NCBI-GeneID:
103617944
NCBI-ProteinID:
XP_008634511
LinkDB
All DBs
Position
Unknown
AA seq
1359 aa
AA seq
DB search
MEFPSSFTSTERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSELTHAVMACDLALRT
KHTIRSLIQSFPVTNKERTELLPRTERGSARAIESENKELNKTSGRLNDGIPQVPVKRGE
SEFDSFRQSLPVLEKQEEIVQTIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGAPCRV
FCTQPRRLAAVAVAERVAAERREKIGQTIGYQLRLESRVSPKTLVTFCTNDMLLRMLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRGVLQNQNNLKLIISSAALDANLFIRYFGSC
PVIHIQGRPFEVKEMFLEDILRSTGYTNKGMVKYKKEKQQEEKQKITLAEWCSAEENTNK
LACRRQKSVPRANEEYSLLDDGGDTVFNQLAEKDVNCLEPWIVKEMDSCLSDIWLHKDID
SFAQVFHLILTENVSVDYKHSETGVTALMVSSGRGFLSQVEQLISMGASIHCKSSNGWTA
VDWARRFRQTEVVDLLESYSASFGFGNLDESSLVQKSGSDLSAEDRELLTAYHHSFEDEK
VDLDLTMHLLHSICRSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAPRYQVFMLHS
SVQTLDQKKVLETPPSGVRKIILSTNIAETSVTVSDVVFVIDSGKVKEKSFDALSCVTVL
RMGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKLL
APINCPVVDFLMKAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGK
MVLYAVVLKCLDPVLTIACALAGQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRA
FQAWQKARADGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGKQLGRNFNLLTWHRF
VLFFXQVFNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYDKVPPADGQAAAIQALPTD
WLIYDKMTRARKTANIRCCSVVTPVTVSLFCGPARLPSNALQASSAFRGGGVSNDSSDSE
MEDKTTADLALLKLDEWLHLRLDPEAAGMLLQLRQKWHSLFLRRMRAPSKPWSQADETTV
RAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSRKSSTETEFSDSSSA
EKVSVKSTSPALHQPKKYKEKDILLSKRSSDDRSAQSSVKPADSGSCPSPCASPSSPVSA
KGCRSPSPRQNRPVRYFIMKSSNLQNIDISQQKGIWSTTPSNEGKLNGAFWESSLVYLIF
SVQGSGCFQGFARMGSAIGREKSQDWGSAGFGGVFKVDWIRKESIPFQFAHHLLNPWNDS
KKVQIGRDGQELEPQVGEQLLQLWDRIPLAGKSLTERAK
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccttctagtttcactagtactgaaagagcatttgttcaccggctctgtcag
tctcttggactggtgtctaaaagcaaaggaaaaggagcaaatcgatacctgactgtaagg
aagaaggatgtctcagaactgacacatgcagtcatggcttgcgacttggctctccgtacg
aaacacaccattcggagcctcattcagagctttcccgtcacaaacaaggaacgcacagaa
ctcttgccaaggacagagcgaggaagtgcgcgtgctattgaatctgaaaacaaagaattg
aacaagacaagcggtcgacttaatgacggtatcccccaggtcccagtgaaaagaggggaa
tcagagttcgattccttcaggcaatcactaccagttcttgaaaaacaggaagaaattgtc
caaacaataaaggacaataaaattgttttgattataggagagacgggatcgggaaaaact
actcaaatccctcagtttatccttgatgactgctacaagaatggagctccctgtcgtgtg
ttttgcactcagccgagacgtttagcagctgttgctgtggctgaaagggtggcagcagaa
aggagagagaagattggccagacaattggttaccagctccggttggaaagcagggtttct
ccaaagacactggtaacattctgcactaatgacatgctccttcgcatgctgatggcagga
gacagcaccctctccactgtgacgcatgtgattgtggatgaagtacatgagagggatagg
ttcagcgacttcttgctaataaaactgagaggtgtgctgcaaaaccagaataatttaaaa
ctaattatttctagtgctgctctagatgcgaatctttttattaggtattttggaagctgc
ccagtaatacacatccaaggaagaccttttgaagttaaagagatgtttctggaggacatt
ttgcgaagcactgggtatacaaacaaagggatggtaaagtacaaaaaagagaagcagcaa
gaagagaaacagaaaatcactcttgctgagtggtgttccgctgaagaaaacaccaacaaa
ctggcatgtcggagacaaaaatcagttccaagggcaaatgaagagtacagtctgttggat
gatggtggtgacacagtatttaatcaactggctgaaaaagatgtgaattgccttgaaccg
tggatagtaaaagaaatggattcctgtctgtctgacatctggttgcataaagatattgat
tcctttgctcaggtgttccatctaattttaactgaaaatgtcagtgttgattataagcac
agtgagaccggcgtgactgctctgatggtttcttcagggagaggctttttgagtcaagta
gaacagctgatcagtatgggagcaagtatccactgcaaatcatccaatggctggacggct
gtggactgggctaggcgcttcagacagacagaggttgttgatctgttggaatcctacagt
gcttcattcggatttggaaatctggatgaaagttccctggtccaaaaaagtggtagcgac
cttagtgcagaggacagagagctactgacagcttatcatcacagctttgaggatgaaaaa
gtggatctggatctgaccatgcacttactccacagcatctgtcgtagctgtgatgcggga
gccattttaatatttcttcctggatatgatgagatagtgagcctgagggaccgcattctt
tttgatgacaagagatttgctgataatgctcccagataccaagttttcatgcttcattcg
agtgtgcagactttggatcagaaaaaagtgcttgaaactccaccttctggcgtccgcaaa
attattctttctactaatattgcagaaaccagcgtaacagtcagtgatgttgtatttgtc
attgactcaggcaaggtgaaagagaagtcttttgatgcactgagctgtgttacagtgcta
agaatggggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgt
cagcctggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaattt
cagtctccagaacttctaagaatgccacttcaggagatttgtttatacacaaagcttctg
gctccaattaattgtccagttgtggactttcttatgaaagctcctgatcctccgcctgct
gtaactgtcagaaatgctgtgcacatgcttaagaccatagatgccatggacccttgggaa
gatctcactgagcttggttaccacctcactgaattacctgtagagccacacctgggtaaa
atggtgttgtatgctgttgtgctgaagtgcctggatcctgttctgaccattgcctgtgct
cttgccggccaagacccttttgtgctgcccacgctggcctcccaaaagcgtgcagccatg
ctgtgcaggaagcgttttgctgcagggacgttcagtgaccacatggccctgctcagggct
ttccaggcgtggcagaaggcgcgcgctgatggctgggagagagccttctgtgaaaagaac
ttcctatcccaagccacgatggaaatcatcgtaggaatgagaacacagctgctcggccag
cttagagcctcgggtaaacagcttggaagaaattttaacctcctaacatggcaccgtttt
gtcctgttcttctgacaggttttcaatcttgtgcacgtagacagggaaagcctggttttg
actgaaccaaaggagaagaaagtgcgatttcatcctacctctgttcttggtcaatctcag
tatgacaaggttcccccagcagatggacaagctgcagccatccaggccctccctacagac
tggcttatctatgacaaaatgacgagagctcgcaagacagcaaacatcaggtgctgctct
gttgtgacacctgtcaccgtgtccctcttctgtggaccagccagactgccaagtaacgcc
ttgcaggcatcttcagccttccgagggggaggggtatctaatgatagcagtgacagtgag
atggaggacaaaacaactgctgatctggcactactgaagctggatgaatggcttcatctc
agactggaccctgaagctgctgggatgctgttgcaactcaggcagaagtggcacagtttg
ttcctgcgtcgtatgcgagctccttctaaaccgtggtctcaagctgatgaaacaactgta
agagccattacagctgttctgagtgctgaagaacagtctgcaggtctgcagcagccttca
ggaattggccagagaccaagacctgtgacttgtgaagagcttcctttggcatctacatgg
aagtcaaccaacagtagaaaaagctcaacagaaactgaattctccgactcctctagtgct
gaaaaagtttcagtgaaatctacatctcctgcactccaccagccaaagaagtacaaagaa
aaagacattttgctctccaaacgatcctcagatgacagatcagctcagtcctcagtgaag
cctgcagacagcggtagctgtcccagcccctgtgctagtccttcttctccagtatctgca
aagggttgcagatctccttcaccaagacaaaataggccagttcggtactttataatgaaa
agcagcaacttgcaaaacattgatatttctcaacagaagggaatatggtccactacgcca
agtaatgaagggaaactgaatggagccttttgggagagcagcctggtttacttaatattt
tctgttcaagggtctggatgctttcaggggtttgctagaatgggttcagcaattgggcgt
gagaaaagtcaagactggggatctgctggtttcggaggtgtgtttaaggtggactggatc
cgaaaagaaagcattccttttcagtttgcacaccatttgctcaacccgtggaacgacagt
aagaaagtacagataggtagagatggccaggagctggaaccacaagttggagagcagttg
ctgcagctttgggaccgtattcctttggcaggaaaaagcctgactgagcgtgccaagtag
DBGET
integrated database retrieval system
