Corvus brachyrhynchos (American crow): 103619912
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Entry
103619912 CDS
T08418
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103619912 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbrc03041
]
103619912 (DDX42)
Enzymes [BR:
cbrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103619912 (DDX42)
Spliceosome [BR:
cbrc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103619912 (DDX42)
Complex B
103619912 (DDX42)
Complex C
U2 SnRNP specific factors
103619912 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
103619912
NCBI-ProteinID:
XP_017595973
LinkDB
All DBs
Position
Unknown
AA seq
835 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPESPIAAMVAAKGVPGFTSTGNLSSVPT
FPSVGAQGFNNTNTSTNSREGGGGVGGVVRERYNDNRPSRHGEAPRRGGGGGRAE
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggcggacctggtacgaagagaggcttcgggtttggtggatttgcc
ataacacctgggaagaaagaggagcccaagctgtctcagcagtcccacagtgcttttggc
acagccggctcctcggcagcgttcgcaaaatcgggacctcctcagctgccttccttctac
aaaatcgggtcaaagagagcaaattttgatgaggagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcccgcagagaattcccccactcggcag
cagttccattccaaatctgcagactctgacagtgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactcgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcatat
tttcgctacatggctgagaaccccactgctggtgtggtgcaagaggaggaagaggataac
ctggagtacgatagtgatgggaatccgattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccatttgagaaaaatttctacgatgag
cacgaggagatcaccagcttgaccccgcagcaagtggtggagttacggcacaagctgaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacag
tgtcagggtgttccagtggccctaagtggcagagacatgattgggattgctaagactgga
agtgggaaaacagccgccttcatctggccaatgctgatccacatcatggatcagaaggag
cttgaaccaggggatggtcccattgcagtgatcgtctgcccgaccagggagctctgccag
cagatccactccgagtgcaagcgctttggcaaggcgtataacctgcgctccgtggctgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcactccaggtcgtttgattgatcatgtgaaaaagaaagctacgaaccttcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgagtatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggcccgggatattctgatcgacccaattcgggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagatcttcccctct
gggcccagcaagtggaactggctgacacggcgcctcgtggagttcacgtcctccgggagc
gtcctcctctttgtcaccaagaaagccaacgcagaggaactggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagtgagagaaataaagtc
atttcggagttcaagaaaaagggcatccccatactggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactatgacgtggctcgggacatagac
acccacacccaccggatcggccgcaccggccgcgcgggggagaagggcgtcgcttacact
ctgctgacccccaaggacagcaacttcgctggtgacctcgtcagaaacctggagggtgcc
aaccaacacgtctccaaagagctgctggatctggcaatgcagaatccgtggttccggaaa
tcccgttttaaaggagggaaaggcaagaagctgaatattggtggtggaggcttgggatac
cgcgaacgccccgggctgggctcagaaaataccgaccgtggaaacaacaacagtgtgatg
agcaactacgaggcctacaagccatccacgggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgctgctggtgccagcggctggaccagcgctgggagcctgaactct
gtcccgacgagttcagcgcagcaaaacgctgccaaccccgagagccccatcgcggccatg
gtggcagcaaagggtgtcccgggcttcaccagcaccggcaatctgagcagcgttcccacc
ttcccgagtgtcggagcacagggcttcaacaacacaaacaccagcaccaacagtcgagaa
ggcggcggcggcgttggtggcgttgtcagagaacggtacaacgacaaccggcccagtcgc
cacggcgaggccccgcggcgtgggggggggggggggcgcgcggag
DBGET
integrated database retrieval system
