Corvus brachyrhynchos (American crow): 103620311
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Entry
103620311 CDS
T08418
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cbrc03036
]
103620311 (CHD9)
Chromosome and associated proteins [BR:
cbrc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
103620311 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
HTH_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
103620311
NCBI-ProteinID:
XP_017596315
LinkDB
All DBs
Position
Unknown
AA seq
2846 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSPADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPNTPLNSSTFQMLHSAHPQGNFSSSKLSPVNINFPAS
TGSASQISHFSDPIESNGFTSLDDNLLHQVETHNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEPDLEHHITPQQVTPSSELVRAQSQTQIHPWHSSVSNQHLQGRGRATLQGQP
PSSKKTDGSGSYTKLQNTQVRAMSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKIKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAAENPS
EEDAAIVDKILSSRVIKKEISAGMTVDTEEFFVKYKNYSYLHCEWATEQQLLKDKRIQQK
IKRFKVRKAQRAHFFADMEEEPFNPDYVEVDRVLEVSLCEDKDTGEPVIYYLVKWCSLPY
EDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPNSWKKIEQSREYKNGNQLREYQL
EGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTITNWER
EFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIVRGTYRFQAIITTFEMILGGCPE
LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQKFGDLKTEEQVQKLQ
AILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVP
NLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLL
PKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDR
FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNS
YEREMFDRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEG
SKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAE
IDIDAISGRNSLVIDTPRIRKQTRPFSATKDELAELSEVESEGDEKPKLRRPCDRSNGYG
RTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKS
FIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLL
QDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNEFQKVFDGIDASEIDVWVPEPDHSEVP
XXXXEWWDADADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYM
DGDVEDPEYKPAPAMFKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRL
ITAYQRTSKNRQAQQIQPTFPVQTSMMQPPYEEAALNPKMAAKIERQQRWTRREEADFYR
VVSTFGVVFDPERGRFDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVD
PNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDR
DLLIGAAKHGVSRTDYHILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPL
TPQSRLSDAKVNAFEDAKAKNENLKEDPQSSEDESMSTEETQTILKSEPLSPKNGTPIQI
TDHRPSMKAETDRRMVAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSS
SSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRE
GTPHIKAYDEESVASLSTTQDETQDSFQMNNGTPNSGYLLQGGYMLAASYWPKDRVMINR
LDSICQTVLKGKWPSARRSYDSTTVASFYTTKLLDSSGAAAEYSEPSAPTPPLAAVKEEY
DQSPQLSKVKKHVREKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLR
ELQNASETSLVNFPKSLPKSGTSSHLTASANGVIVDSQPVVKKRRGRRKNVEGVDVLFMN
RNKQPNHVNPGINSCQVAAGINPALTYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRK
DLERWLKEHPGYVEDSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRR
NARKVGGAFAPPLKDLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEV
SRRGRRPKSEIAKATAAAAAASAASVSVNPLLANGLLPGVDLPSLQALQQNLQNLQSLQV
TAGLMGMPAGLAAGGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLAKSTESISEEKKGSDS
KETDTKKERTEDQNTDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGL
NLHIPPLSQSNIFDVQNSESNDTGSAKPTEEKEENSRVRDQDDKGGTEPSSHNENSTDEG
SEKADASSGSDSTSSSSEDSDSSDED
NT seq
8541 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagcccagctgacaatgtcttatcaccacactctcaattc
aattgttcaccagttcatccgcaaaaccagtccaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcatcaaactgccacaactgtttcaaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacggccgcagcaa
agcaggaacaacacggggcaggatgctctgagtcagccaaaagacttcatggaagttaac
gtgtctacttccctcagagtcagtgttaaccacccaccttcagtttctaatccatcaact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtgcttcaatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttctgtc
agtaatagtcaacaattttcatctccgtattcttactctaataatcacatttctcctacc
agccttcttcagcctacaacagctctttctactagccagcagacacactctatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaaccgagcac
atgttgaatcctaatacacctttgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgaatattaattttccagcttcc
actggttctgcttctcagataagccatttcagtgaccctattgaaagcaatggttttaca
tctttagatgacaacctacttcatcaagtggagacccataatgaaccattcacaggactt
gaccccgatgacctcctgcaggaagaccttctgccacagttcgatgactctgcgtttgtt
caggatagcacaagccatgttttagagcctgacctagaacaccacataaccccacagcaa
gtgacaccgtcatccgaactcgttcgggcacagtctcaaactcagatccatccttggcat
tcttcagtttctaatcagcacctgcaaggtagaggtcgtgcaaccttacaaggacagcct
ccttcttccaagaagactgatggttcaggatcatatactaagttgcagaatacccaggtg
agggcaatgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaag
gcaaatcgaataatatctgaagcaattgcaaaggcaaaagagagaggagagagaaacatt
ccaagagtaatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaag
aagggtagaaaagttaaatccaaaccaaaggataaggagagcaaaaagccgaaaactggt
tcctcatccaaaattaaagagaaaacaaaaattggaaagctgataatcacgctgggcaaa
aagcagaaaaggaaaaacgaatcttcagatgaattgtctgatgctaagcagactccacag
aggccgctgaaagatgaagactcacagaagagaagatcaaatcgtcaagttaaaaggaaa
aaatacgctgaagagggagaagggaaacaatcagaagaagaagcagctgaaaatccaagt
gaagaagatgcagcaattgtagacaaaatcttatcctccagggtaataaagaaagaaata
tctgctgggatgacagtagacacagaagagttttttgtaaaatacaagaactactcatat
ctccactgtgagtgggccacagaacaacagcttttaaaagataaaagaatccagcagaaa
ataaaacgattcaaagtaaggaaagcacaaagagctcacttttttgcagatatggaagag
gaaccttttaatcctgactatgttgaagtagaccgggtattagaagtgtctctttgtgaa
gataaagacactggtgagcctgttatttactatttagtaaaatggtgctcgttgccatat
gaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaatttgaa
caattacaagcttccaggcctgactcaaggagattggatcgaccacctccaaactcctgg
aagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaatatcaactg
gaaggacttaactggctcctattcaactggtacaataggcgaaattgcattttagcagat
gaaatgggccttggcaaaaccattcagtccattacgttcctgtatgaaatcctcctgact
ggtataagaggccctttcctgatcatagctccgctttccactataacaaactgggagaga
gaattccgcacgtggactgacctgaatgttgtggtgtaccacggaagtatgatcagcagg
cagatgattcagcagtatgagatgtacttcagggactcccagggccgtattgttcgaggt
acctacaggttccaggccattattacaacttttgaaatgattcttggtgggtgtccagaa
ttaaatgcaatcgagtggcggtgcgttattattgatgaagctcacagactaaagaataaa
aactgcaaacttttggaaggactaaaattaatgaatcttgagcataaagtgctgttaaca
ggtaccccactgcagaagttcggagaccttaaaacagaggaacaggttcagaaactacaa
gctatcctgaaacccatgatgctcaggagattaaaagaagatgtagaaaaaaagctggct
cctaaggaggaaactataattgaagtagaactaactaatattcagaagaaatattaccga
gctattttggagaaaaattttgctttcttatccaaaggagcagggcaggcaaatgtaccc
aatctggttaacactatgatggagctcagaaagtgttgtaatcacccttatctcatcaaa
ggtgctgaagagaagatccttggagagtttaaagaaacatacagtccaagtgctcctgac
tttcacctgcaagcaatgatccagtctgctgggaaattggttcttattgataagcttctt
ccaaaaatgaaagcaggaggccacaaggtccttatcttctctcaaatggtgcgctgcctt
gatattttggaggattaccttatacataaaaggtatttgtacgagcgaatcgacgggcgc
gtgcgagggaacctcaggcaagctgccatcgaccgcttcagcaaaccagactcagatcgc
ttcgtcttcctcctctgcaccagggctgggggcctgggcatcaacttgactgcagcagat
acctgtatcatttttgattctgactggaatcctcaaaatgacctgcaggctcaagcccga
tgccacaggattggtcagaacaaagcagtgaaggtctacaggctgattacacgtaattcc
tatgagagagagatgtttgacagagcaagtctgaagctgggactggataaggctgtcttg
cagagtatgagtggaagagaaaacagtgttggtggtatccaacaactctccaaaaaagaa
atagaagacttgcttcgaagaggtgcctatggtgccattatggatgaagaggatgaaggc
tccaagttctgtgaggaagacattgaccagattctgcagcgtcggactaaaacgatcaca
attgaatccgagggaagaggctccacatttgccaaggctagttttgttgcatctggaaac
aggactgatatttcactagatgatcccaacttctggcagaaatgggccaaaaaagcagaa
atagatattgatgctatcagtggtagaaacagcctggttattgataccccaagaatcagg
aaacaaacacggcccttcagtgctacaaaagatgagctggcagagctgtctgaggtggag
agtgagggtgatgaaaaaccaaagctccgcaggccgtgtgaccgttccaatggctatgga
aggacagagtgcttccgggtggagaagaacttgctggtctatgggtggggtcgatggaga
gaaattctgtcccatggtcgcttcaagaggcagctgaatgaacaggatgtggagataatt
tgccgagccctattagcctattgtcttgttcactacagaggggatgagaaaataaagagt
tttatatgggatctcatcaccccaacagaggatgggcaaacacgagagttacagaaccac
cttggcttatcagcccctgtgccaagaggaagaaaaggaaaaaaagtgaagacccaggct
agcacttttgatatacacaaagcagaatggcttcgaaaatacaatccagaacatcttttg
caagatgaaggatacaaaaagcacataaaacaccattgcaacaaggtcttacttcgagta
agaatgctgtattacttaaaacaagaagtcattggtaatgaattccaaaaggtctttgat
ggaattgatgccagtgaaattgatgtttgggttcctgagccagatcactctgaagttccn
nnnnnnnnnnntgagtggtgggatgcagatgcagataaatctcttctaattggagttttt
aaacatggttatgaaaaatacaacactatcagagcagacccagctctttgcttcttggaa
agggttggaaaaccagatgagaaagcagttgctgctgaacagagagcaaatgattatatg
gatggggatgtagaagatccagaatataaaccagcaccagcaatgtttaaagatgacata
gaggatgatgtttcatccccaggtgatctagtaatagcagatggagatggacaaatgatg
gaaggcgacaaaatctattggcccactcagtctgccttaacaacgcgtctgcgccgcctg
ataacagcttatcaacgaacaagtaaaaacaggcaggcccagcagatccagccaacattc
ccagtacaaaccagtatgatgcagcctccatatgaagaagctgcactaaatccaaagatg
gctgctaagattgaaagacagcaaagatggacaagaagagaagaagctgacttttacaga
gtcgtgtccacatttggagtggtgtttgaccctgaaaggggacgatttgactggaccaag
tttcgagcaatggctcggctgcacaagaaaactgatgagagcttggagaagtacctgtat
gcatttatgtcaatgtgcaggagggtctgtcgtctcccctcaaaagaagaacttgtggac
ccaaacatttttatccagcccatcacagaggaacgtgcttcccggactttgtaccgcatc
gagctcctgcggaaagtgcgagaacaggctctcagacacccacagttgtttgagcgacta
aagctgtgccagccaaacccagacctacctgtctggtgggaatgtgggactcatgaccgg
gatttacttattggagctgctaaacatggagttagcaggacagattatcatattcttcgt
gatcctgaactctcgtttatgtctgcccagaggaactataatcaaaacaaagtggctctc
tcgaggacttctactccactcttgcaccagtaccagatggcattatctgcttctcctctt
acacctcagtcaagactgtcagatgctaaagtgaatgctttcgaggacgcaaaagctaaa
aatgaaaatctgaaagaggaccctcagtcttctgaagatgaatctatgtctacagaggag
acacagacaatactgaaatctgaacctctgagtcccaaaaatggcaccccgatacaaatt
acagaccacagacctagcatgaaggctgagacagacaggcgcatggtggcagcaaggaca
gagcctctaactccaaacccagcttccaaaaaacagagagtcagcaaaagggggtctgac
tctagctctgactcagactctgactcagatagatcatcctgttcttccaggtcatcatct
tcatcctcttcgtcttcctcatcttgttcgcactctcgatctggttctagctcttcatca
tcttcatcttgttcttcagcatcttcatcctcctcctcatcgtcctcatcatcatcgtcg
tcgtcatcatcatcgtctgaagagagtgatagtgatgaagaggaggcacaaaaacgtgaa
ggaactccacatataaaagcctatgatgaagagagtgtggcctctctgagcaccacacaa
gatgagacacaagacagtttccagatgaacaatgggacaccaaattccggttatctccta
caaggtggatacatgttggctgcgtcctactggccaaaggatcgagttatgattaaccga
cttgacagtatttgtcagacagtgttgaaaggtaaatggccttcagcccgaaggagctac
gacagcactacagtggcatcgttctacaccaccaaactgctggatagctcaggggcagct
gcagagtacagtgagcccagtgcacccacaccccctcttgcagctgtaaaagaagaatat
gaccaatcaccccagctgtcaaaggtgaagaagcatgtacgagaaaaggagtttacagtg
aaaatcaatgacgaaggtggtttgaaattgacttttcagaagcagggactgtctcagaaa
aggccatttgaaagcgaggagggtgcattgggtcagcagcaatatctggctcggctacgt
gaactccagaatgcttcagaaaccagccttgtcaacttcccaaaatcacttcccaaatca
ggtacttccagtcacttaacagccagtgccaatggagtcatagttgacagtcagcctgta
gtcaaaaagagacgaggaagaaggaagaatgtggagggggttgatgtcctcttcatgaat
agaaataaacagcctaaccatgttaatccaggtattaactcctgtcaggttgctgcaggc
ataaacccagcactcacttacacgcagtcccaaggcatgcttgatgcagagagtcccgtt
cctgttattaacctaaaagatggaacaaggcttgcaggtgatgatgcccccaaaagaaaa
gatttagaaaggtggcttaaagaacatcctggatatgttgaagattcaggagcttgtatt
cctaggatgcagctgcatgatgggaggcccaaacaaaaaagacaccgttgtcgaaacccc
aataaactggatgttaacagtttaactggtgaagaacgtgtccagctcataaatagaaga
aatgcgagaaaggttggaggtgcatttgctccccctctgaaggatttgtgcaggttcttg
aaagaaaatccagagtatggagtggctcctgagtggggagaagttgtaaaacagtctggc
ttccttccagaaggaatgtttgaccgtatcctcacaggcccggtggtgcgggaagaagtg
agccggagggggaggcgtcccaaaagcgagatcgccaaggcaacagcagctgcagcggcc
gcctctgctgccagcgtgtccgtgaaccccctgctggccaatggattgctgccaggagtg
gatctgcccagtcttcaggccttacagcaaaacctgcagaacctgcagtcgctgcaggtg
acagcaggattgatgggaatgccagctggcttagctgctggaggagaggccaagaacatg
gctgccatgttccccatgctgctgtcagggatggctggattaccaaacctgctgggcatg
ggaggacttctggcaaagtcgacagaatccatttcggaggagaaaaagggaagcgattca
aaggagacggatacaaagaaagaaaggacagaagaccaaaatacggatactggtggtgaa
aactctgtttcaagttctccttcaacatcctctgccgctgcagctgccaatcctctctct
cttaaccctttacttttgtccaacatactttacccagggatgcttctcactccaggcctt
aatcttcatatcccacctttgtctcagtctaatatttttgatgtacagaacagtgaaagt
aatgacacaggctcagccaagcccacagaggaaaaggaggaaaattctagggttagagat
caggatgacaaagggggaacagagccaagctctcacaatgaaaacagcacagatgagggt
tcagagaaagcagatgcttcatctggatctgacagtacatcgtcttcatctgaggattcg
gattcgagcgatgaagactga
DBGET
integrated database retrieval system
