Corvus brachyrhynchos (American crow): 103620430
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Entry
103620430 CDS
T08418
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc04510
Focal adhesion
cbrc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103620430 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103620430 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cbrc00536
]
103620430 (COL2A1)
Glycosaminoglycan binding proteins [BR:
cbrc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103620430 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
103620430
NCBI-ProteinID:
XP_017596692
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MEWNREGQPGGQWEDKPEPCRICVCDTGTVLCDEITCEELRDCPSPEIPFGECCPICPSE
QPSGWQPGPKGQKGEPGDIKDVSGGDTPKKGWGPQGFQGNPGEPGEPGAAGPMGPRGPPG
PPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPG
AKGPAGEQGQRGDRGEKGEKGAPGPRGRDGXPGTPGNPGPPGPPGPPGPPGLXXNFAAQM
AGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGAAGPMGPRG
PPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGAPRPPGGNPGTDGIPGAKGSAGAP
GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPA
GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKVGLWGHXGCPXXXXPKGA
TGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGF
PGPKGANGEPGKAGEKGLPGAPGLKGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF
QGLPGPPGPPGESGNPGAQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT
PGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGA
RGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQ
PGAKGEQGEPGQKGDAGAPGPQGPSGAPGPPVGPHGPHXXXXXXXPQGATGFPGAAGRVG
PPGPNGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPG
NPGPPGPPGSAGKDGPKGGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGSPGSD
GPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPA
GARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPR
GPPGPVGPSGKDGSNGMPGPIGPPGPGGRSGEPGPAVSGEPRGSGSSGAGIQGIQQNKGI
QQRRRIQKDEGIQKSRGIHEEGGLGLELGVDATLKALNNQIESIRSPEGSRKNPARTCRD
IKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKK
HVWFADTINGGFHFSYGAEDLAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESG
SLRKALLIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDI
APMDIGGPEQEFGVDLGPVCFL
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggagtggaacagggagggacagcctgggggacagtgggaggacaagccggagccgtgc
cggatctgcgtgtgcgacacggggacagttctgtgcgacgaaatcacctgcgaggagctg
cgggactgccccagccccgagatccccttcggagagtgctgccccatttgccccagcgag
cagcccagcggttggcagcccggccccaagggacaaaaaggtgaacccggtgacatcaaa
gatgtgagtgggggggacaccccaaaaaagggctggggtccccaaggattccaaggcaac
cccggcgaacccggcgagcctggcgctgctggtccgatgggtccccggggacctccagga
cctcctggaaaacccggtgacgacggtgagaccggaaaaccagggaaatccggcgagcgc
ggcccccccggcccccagggcgctcgtggcttccccgggacccccggcctgcctggagtc
aaaggccaccggggctacccgggcctggacggtgccaaaggagaggcgggagcgcccgga
gccaagggccccgcaggtgagcagggacagcgaggagaccgcggcgagaagggggagaag
ggtgcccccggtccccggggcagggatgggtaacccggaactccaggaaatcccggcccc
cccggcccccccggacccccgggacctcctggcctgnnnnagaactttgcggctcagatg
gccgggggcttcgacgagaaggctggaggggctcagatgggcgtcatgcagggacccatg
ggccccatgggaccccgcggcccccccgggccctccggctcccctggtccccaaggattc
caaggcaaccccggcgaacccggcgagcctggcgctgctggtccgatgggtccccgggga
cctccaggacctcctggaaaacccggtgacgacggtgagaccggcaaaccagggaaatcc
ggcgagcgcggcccccccggcccccagggcgctcgtggctttcccggggccccccgcccg
cctggggggaacccaggtaccgatggcatccccggagcgaagggatcggcgggcgccccg
ggcatcgctggcgctccaggattccccggcccccgcggcccgcccggacctcagggagcc
accggcccgctgggccctaagggacagacgggcgaacccggcatcgcgggcttcaaaggc
gagcagggacccaagggagagacgggccccgcaggaccccaaggtgcccctggaccggcc
ggggaggaagggaagagaggagcccgcggagagcccggagctgctggacctttggggcca
cctggagagaggggcgctcccggcaaccgcggcttccccgggcaggacgggctggccggc
cccaaggtgggactttggggacactaggggtgtccnnnnnnnnnnnnccccaaaggagcc
accggcgaccccggacgccccggagagcccggcctgcccggagccaggggtctcactggc
cgccctggggatgccggaccccaaggcaaagtcggccccacgggtgcccccggtgaggac
gggcgccccggaccccccggcccgcagggggctcggggccagcctggcgttatggggttc
cccggtcccaaaggtgccaacggtgagcctggaaaagccggggaaaaaggacttcctgga
gcgccggggctgaagggacttcccggcaaggacggagagactggagctgctggaccccca
ggacctgctggccccgcaggggagaggggagagcaaggagcccccggcccctctggcttc
caggggctgccagggccaccagggccccccggcgagagcggcaaccctggagctcagggt
gttcctggagaagctggagcccccgggctcgtgggtcccaggggcgagcgcggcttcccc
ggtgagcgcggctctcccggcgcccagggcctgcaggggccccgcggcctccccggcacc
cccggcaccgacggacccaagggcgccactggccccgccggccccaacggcgcccaggga
cccccagggctgcaggggatgcccggggagagaggagcagccggaatcgccggtcccaag
ggggacaggggagacgtcggagagaagggacctgagggagcccccggaaaggacggagct
cgcggtctgaccggtcccatcggcccccccggccctgctggccccaacggcgagaagggc
gagtccggcccccccggcccatctggagccgcgggtgcccgcggtgcccctggagagcgt
ggagagcccggggcccctggccccgctggattcgctggacccccgggtgctgatggacaa
cccggagccaagggcgagcagggggagcccggccagaagggcgacgccggcgcccccggg
ccccagggaccctccggagctccaggcccgccggtggggccacatgggccccaccnnnnn
nnnnnnnnnnnnnatccccagggagccaccggattccccggagctgccggacgcgttgga
ccccctggccccaatggtgctgatggacaacccggagccaagggcgagcagggggagccc
ggccagaagggcgacgccggcgcccccgggccccagggaccctccggagctccaggcccg
cagggtcccactggtgtcaccggccccaaaggagcccggggcgctcagggtcccccgggt
aaccccggcccccctggcccccccggctccgcgggcaaggacggccccaagggcggagag
cctggaaaacagggagcgcctggatctgctggagaccgcggaccccccggccctgtggga
ccccccgggctgaccgggccggccggagagcccggacgggagggaagtcccggctctgac
ggacccccgggcagggatggggcggccggagtgaagggcgatcgtggcgagaccggcccc
gtgggtgctcccggtgctcccggcgctccaggagctcccggccccgtgggacccactgga
aaacagggagacagaggagagacgggtgctcagggtcccatgggtccctccggccccgct
ggcgctcgggggatgccgggtccccagggcccgcgcggtgacaaaggcgaggcgggagag
gccggtgagcgcggcctgaaggggcaccggggcttcaccgggctccaggggctgcccggg
ccccccggtccttctggagaccaaggcgctgccgggcctgcaggtccctccgggcccagg
ggtccccccggccctgtgggcccctcgggcaaggatggctccaacgggatgcccgggccc
atcggcccccccgggcccggcgggaggagcggcgagcccggcccagcggtgagcggggaa
ccgcgcgggagcggatccagcggggcagggatccaggggatccagcagaacaaagggatc
cagcagaggagaaggatccagaaggatgaagggatccagaagagcagggggatccacgag
gaggggggattagggttagaattaggggtggacgccaccctcaaggccctcaacaaccag
atcgagagcatccgcagccccgagggctcccgcaagaacccagccaggacctgccgcgac
atcaaactctgccaccccgactggaagagtggcgattactggatcgaccccaaccagggc
tgcaccctggacgccatcaaggtcttctgcaacatggccacgggggagacatgcgtgtac
cccagccccggcagcatccccaggaagaactggtggagcagcaaggccaaggagaaaaag
cacgtctggttcgccgacaccatcaatggtggcttccacttcagctacggtgccgaggac
ctggcacccaacacggccaacatccagatgaccttcctgaggctgctgtccaccgagggc
tcccagaacgtcacctaccactgccgcaacagcgtggcctacctggacgaggagtcgggc
agcctgaggaaggccctgctcatccagggctccaacgacgttgagatccgcgccgagggc
aacagcaggttcacctacagcgtgctggaggacggctgcacgaaacacaccgggaagtgg
ggcaagacagtcatcgagtaccgctcgcagaagacctcgcgcctgcccatcgtggacatt
gcacctatggacattgggggacccgagcaggagtttggggtcgacctcggccccgtctgc
ttcttgtaa
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