Corvus brachyrhynchos (American crow): 103621531
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Entry
103621531 CDS
T08418
Symbol
LIG3
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
103621531 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbrc03400
]
103621531 (LIG3)
Enzymes [BR:
cbrc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103621531 (LIG3)
DNA repair and recombination proteins [BR:
cbrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
103621531 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
aRib
mRNA_cap_enzyme
DUF3802
Motif
Other DBs
NCBI-GeneID:
103621531
NCBI-ProteinID:
XP_017598505
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MPTGGRALSHAARALGRGTALFCPRPQLSLPRPFSCCVRVKPGHWCQLLFQPVSLPATDQ
RGAAGAFRLSLLLGARPRSARTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDEEKETINKYI
SEANSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSAHKSSLS
ASKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKLL
LPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
LLTIQEVDEFLIQLSKLTKEDDQQTVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLHNQQEAEKAPGLKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGXNKNEDNFSYSRGSLKPVLPHKVAHFKDFI
PQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSL
MDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDVKGS
YEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCT
VTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEIT
GAEFSKAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVVAGEE
DESTAGSSGENDENSRSSTPHSSIKSPPSKSPAKAQKAEESRGVIGSPQKAEEKRGEKRK
ASEMEDNGKKQLLLDIFTGVKLYLAPSVKDFARIRRYFIAYDGDLVPEFDTASATHVLGD
IDANPGAQRVTARWIWECIRKRRLLAPC
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcagggcactgtcacacgctgcccgcgctctcggcaggggcacagcg
ctgttctgccctcgcccacagctctccttgcccagacccttctcttgctgtgtcagagtc
aagcccggccactggtgccagctgctgttccagcctgtctccctgccagccacagaccag
cgcggcgctgccggagcgtttcgtctctccctgcttttgggcgcacggccgcgctcagcc
cgcacagctgcggaggacatggcagagcagaggtactgtgtggactatgccaagcgaggc
accgcgggctgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaaa
attgtccccaatcctttcacggagtccgggggggacatgaaggagtggtaccatgtcaag
tgcatgtttgagaagctggacaaggcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctgcaggatgaggagaaagaaacaatcaacaagtacata
tcagaagccaattccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaag
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcact
gccaagccaaagaattcagaagatgcccctgcaaactctgcccacaagtccagcctgtct
gcatccaagtgtgatcccaagcacaaggactgcctgctgcgggaattccggaagctctgt
gccatggtggccgaaaagccaagctacaatgtgaaaacacagatcatccaggacttcctc
aggaagggatctgcaggagatggttttcatggtgatgtatacctgaccattaagctgctg
ttaccaggtgtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agtaggatttttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtt
tccgagaccatacggatcttcttcgagcagagcaagacttgtcctccagcagccaagagc
ctcctgaccatccaggaggtcgatgaattcctaatccagctgtccaagctcaccaaggag
gatgaccagcagactgtcctgcagcagatcagtcgcaggtgtacgggcaacgacctgaaa
tgcatcatcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgttg
gatgctctggatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtg
gtggagcgggtgctgcacaaccagcaggaggccgagaaggcgccggggctgaagaggacc
ctgagcgtgcaggcctcgctcatgaccccggtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgac
ggcgagcgcgtgcaggtgcacaagaacggataaaacaagaacgaggataacttcagctac
tccagagggagcctcaaacctgtgctcccccacaaagtagcccattttaaggacttcatc
ccccaggctttccctggtgggcaaagtatgatcctggattcagaagttctcctaattgac
aataaaactggcaagccacttccttttgggactcttggtgtgcacaagaaagctgctttc
caagatgccaacgtttgcctgtttgtgtttgactgcatctacttcaatgacgtcagcctg
atggacaggcccctgtgtgaacggcgcaagttcctccatgacaacatggtggaaatcccc
aaccggatcctgttctcggagatgaaacacgtcacaaaagcttcagacctggcagacatg
atcacccgagtcatccgggaggggctggaagggctggtgctgaaagatgtcaagggtagt
tatgaaccagggaaacgccactggctgaaggtgaagaaggattatctcaatgagggggcg
atggctgacacagctgacctggtggtgctgggggctttctatggacaaggcagtaaaggt
gggatgatgtccatcttcctcatgggctgctacgaccccaagagcgagaagtggtgcact
gtgaccaagtgctccggtggccacgatgacgccaccctggcacgtctgcagacagagctg
gacatggtgaagatcagcaaggatcctagtaaaattccaaggtggctaaaaattaacaaa
atctactacccagacttcattgtcccagatccaaagaaagcccccgtgtgggagatcacc
ggggccgagttctccaaggccgaggctcacactgcggacgggatctccatccgcttcccg
cgctgcacccgcatccgcgacgacaaggactggcagacagccaccaacctgcagcagctc
aaggagctgtaccagctctccaaggagaaggctgatttcagtgtggtggctggagaggaa
gatgagtccacagctggcagcagtggagagaatgatgagaattccaggtcttccacacct
cacagcagtattaagagtcccccaagcaagtcccctgcaaaagcccagaaggcagaagag
agcagaggagtcattggatcccctcagaaagccgaggagaaacgaggggagaagagaaaa
gcatcggagatggaggacaacggaaaaaagcagctgctgctggacattttcacgggggtg
aagctgtacctggccccctccgtgaaggacttcgccagaatccgccgctacttcatcgcc
tacgacggggacctggtgccggagttcgacacggcctcagccacccacgtgcttggggac
attgatgccaatcccggcgcccagcgggtgactgccaggtggatctgggaatgcatccgc
aagcgcaggctgctggccccgtgctag
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integrated database retrieval system
