Corvus brachyrhynchos (American crow): 103624037
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Entry
103624037 CDS
T08418
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103624037 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103624037 (SKIV2L2)
03041 Spliceosome [BR:
cbrc03041
]
103624037 (SKIV2L2)
03009 Ribosome biogenesis [BR:
cbrc03009
]
103624037 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
cbrc03016
]
103624037 (SKIV2L2)
Enzymes [BR:
cbrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103624037 (SKIV2L2)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103624037 (SKIV2L2)
Spliceosome [BR:
cbrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103624037 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
103624037 (SKIV2L2)
Ribosome biogenesis [BR:
cbrc03009
]
Eukaryotic type
Pre-60S particles
Helicases
103624037 (SKIV2L2)
Transfer RNA biogenesis [BR:
cbrc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103624037 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103624037
NCBI-ProteinID:
XP_008641444
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MAAESQNKYSWKGPLEIIQPRAGDTGMNPAIAPHSGYHGKESGTTLLAHAFEIFIYIYES
PSQSSLNRKRLEEKPPVPAIVKPKREVELDSTENVFLGKKPKLEDVLSEDVNLTDLMPQV
TVQSVDTVEGCTHEVALPANEEFTGLKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLV
SAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTIN
PTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDTERGVVWEETIILLPDNVHY
VFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFR
EDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDC
EAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGL
LPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGKDFRWISSGEYIQ
MSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEI
NPEYMLEKSFYQFQHYRTIPEIVERVNNLEAQYNKIVIPNEENVVIYYRIRQQLAKLGKD
IEEYIHKPKYCLPFLQPGRLVKVKNEGDDYGWGVVVNFSKKSNVKPNSGELDPLYVVEVL
LHCSKDSLKNSATESAKPARPDEKGEMQVVPVLVHLVSAISSVRLYIPKDLRPIDNRQSV
LKSVLEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKIEAFEHRMYSHPLHNDPNLETIY
KLCEKKAQIAMDIKVAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACE
ISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECA
KRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYTWANGANFAHICKMTDVFEGSIIRCMRR
LEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagaatcacagaataagtacagttggaaaggacctctagagatcatccaacct
agagcgggcgacacaggaatgaatccagctattgctcctcattctgggtaccacggaaaa
gagtctggcaccaccctcttggcacacgcctttgaaatctttatatacatttacgagagc
ccctctcagtcttctctgaacagaaaacgattggaagaaaagcctccagtaccagcaata
gtaaagccaaaaagggaagttgaacttgatagtactgaaaatgtctttttgggaaaaaag
ccgaaattggaagatgttttatcagaagatgttaatttgacagatctgatgcctcaagta
acggtgcagtctgtggacactgttgaaggttgtacacatgaggttgcgcttccagcaaat
gaagaattcacgggtctgaagccaagaactggaaaagctgcaaaagaatatccatttatt
cttgatgccttccagagagaagctattctttgtgtagataataaccagtctgtgttagtg
tcagctcatacatcagctggtaaaactgtttgtgctgagtatgcaattgccctggctttg
agggaaaagcagcgcgtgatatttacaagtccaattaaagctttgagtaatcagaagtac
cgtgagatgtatgaagaatttcaggatgttggtttgatgactggggatgtcaccattaac
cctacagcttcttgtttggtaatgacaactgagattttgagaagtatgctttacagaggt
tctgaggttatgcgtgaagtcgcatgggttatttttgatgaaatccactacatgagagat
acagaacgtggtgtggtttgggaagagacaattattttgcttcctgataacgtacattat
gtgttcctttctgcaactattccaaatgcccgtcagtttgctgaatggatctgccatctt
cacaaacagccttgccatgtgatttacactgactatcgacccactccgctgcagcattat
atatttccagcaggaggagatggactccatctggttgttgatgaaaatggagatttcaga
gaagataattttaatacagcaatgcaagtgcttagagatgcaggagacttagcaaaaggg
gatcagaaaggcaggaaaggaggaacaaaaggtccttcaaatgtttttaagattgtgaag
atgatcatggaaaggaatttccaacctgtgattattttcagcttcagtaagaaagactgt
gaagcctatgcacttcagatgacaaagttagacttcaatacagatgaagaaaaaaagatg
gttgaagaagtcttcaataatgcaattgattgtctctccgatgaagacaaaaagcttcct
caggttgaacatgtgcttcccctcctgaaacgaggaattggtattcatcatggtggtttg
cttcctatcttaaaagaaaccatagaaattcttttctcagagggcctaataaaggcctta
tttgcaacagagacttttgctatgggaattaatatgccagccagaactgtgctgtttaca
agtgccagtaaatttgatggaaaagatttccgatggatatcctcaggtgaatacattcaa
atgtcaggtcgtgcaggacgccgaggtatggatgacagaggaatagtaattcttatggtg
gatgaaaaaatgagtccaacaattggcaagcagcttttgaagggttcagccgatccctta
aacagtgcatttcacctgacatataacatggtattgaacttgcttcgagtagaggaaatt
aatcctgaatacatgttagaaaaatccttttatcagttccagcattacagaactattcca
gaaatagtggaaagagtcaataatttggaagcacagtacaacaaaattgtaattcccaat
gaagaaaatgtggtgatatactacagaatccgccagcagcttgcaaaactgggtaaagat
attgaagagtatattcacaaaccaaagtactgcttgccctttctacagccaggaagactg
gtaaaggtgaagaatgaaggtgatgactacggatggggagtggttgttaatttctctaag
aaatcaaatgttaagccaaattccggtgaattggaccctttgtatgtagttgaagtgctc
ctgcactgcagcaaagacagtctgaaaaattctgctactgagtctgcaaagccagccaga
cctgatgagaaaggagagatgcaggttgttcctgttttggtacatcttgtctcagctatc
agcagtgtccgactttacataccaaaagacctgaggcctattgataacaggcaaagtgtg
ttaaaatctgtactggaagtacagaaacggtttcctgatggagtgcctttactagaccct
attgatgacatgggcatcaaagaccaagggttgaaaaaagtaatccaaaaaatagaggca
tttgagcataggatgtactcacatcctcttcacaatgatccaaacttggaaaccatatac
aaactttgcgaaaaaaaagcacagattgctatggatattaaagtagcaaagcgagaattg
aagaaagccagaaccgtcctacaaatggatgaactcaaatgccgcaagcgtgttttgaga
agactggggtttgccacgtcttcagatgttatagagatgaaaggacgggttgcttgtgaa
atcagcagtgctgatgaactactcctgacagaaatgatgttcaatggtctcttcaatgac
ttatctgcagaacaggcaactgcactactcagctgttttgtgtttcaggagaattccagt
gaaatgccaaaattgactgagcagttggcaggaccacttcggcaaatgcaggagtgtgca
aaaagaattgccaaggtgtcagcagaagcaaaactggaaattgatgaagaaaattacttg
aattctttcagaccaaacctaatggatgttgtgtatacatgggcaaatggagctaacttc
gctcacatctgcaaaatgacagatgtctttgaaggtagcataattcgttgcatgaggcgt
ctagaagaactgcttcggcagatgtgccaggctgcaaaagccattgggaacacagaactg
gaaaataagtttgcagaggggattacaaaaatcaagagagatatcgtctttgctgcaagc
ctttacctgtaa
DBGET
integrated database retrieval system
