Corvus brachyrhynchos (American crow): 103624114
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Entry
103624114 CDS
T08418
Symbol
CASC3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03013
Nucleocytoplasmic transport
cbrc03015
mRNA surveillance pathway
cbrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103624114 (CASC3)
09122 Translation
03013 Nucleocytoplasmic transport
103624114 (CASC3)
03015 mRNA surveillance pathway
103624114 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103624114 (CASC3)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103624114 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
103624114
NCBI-ProteinID:
XP_017601114
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
IHDSVLLGAWLLPSPPLTPLSLLSLQESEDGIEGDAVLSDYESAEDSEAEEEDYSEEESS
KVELKQDSNDSCESAARGEKGSEKADPKGAVTGERQSGDGQESTEPVEKKVGKKXXXXXX
XXXXKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKT
RQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPPKPPRHQGAKSPSA
PPRSFNSRRSAGFXEATVPHRNGEQAKQESSYRGKRTEQSPSRDTSPELEVAHVHGSPGK
EEGALENQAMAADAAQPPPDRPVEKKSYSRARRTRVKAGEAGKLAEEAPASEGVAPVIPK
PTPAESSPPPAKSNWESPVESSVDGLEQEMTQMNLTEQNWSPGQSQFIPPRELRGIPNHM
HVGTGPPPQFNRMEEMAVQGGRVKRYSSQRQRPPVPEPAPPMHISIMEGHYYDPLQFQGP
IYTHGENPAPLPPQGMIVQPEMHLPHPGEESVGHPWTWGTENSGLPQPLSFTPPPDAPWQ
LLTPTYFSAPGVMNFGNPGYPYPPGALPPPPPPHLYSNTQAQSQVYGGVTYYNTVQQQVQ
PKPSPPRRTSQPVTIKPPPPEDSKGEKSKERSNT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atccatgattccgtgttgctgggtgcttggctgctgccctcccctcctctaactcccctc
tctcttctctctctgcaggaaagtgaggatggcatcgaaggagatgctgtgctctctgac
tacgaaagcgccgaggactcggaggcagaggaagaggattacagcgaggaagaaagctcc
aaggtggagctgaagcaggacagcaacgattcctgcgagtcggcggccagaggggagaag
gggagtgagaaggcagatcccaagggagcggtgacgggcgagcggcagagcggggacggg
caggagagcacggagcctgtggagaagaaagttgggaagaagngnnnnnnnnnnnnnnnn
nnnnnnnnnnnnaagaacccagcatacatcccacgcaaggggctcttctttgagcatgac
ctccgagggcagacgcaggaggaggaggtcaggccaaaaggtcgtcagcggaagctgtgg
aaggacgaggggcgctgggaacatgacaaattccgtgaggacgagcaggcccccaagacc
aggcaggagctgatcgcactgtacggatatgacatccggtcagcccacaaccccgacgac
atcaaaccccggaggatgcgcaaaccacggtttggcagtccccctcagcgagacccgaac
tggtccaacgagaggccccccaagcccccaaggcaccagggtgccaagagcccctcagcc
cccccacgctcattcaacagccgcaggtctgcgggcttcnnggaagcgactgtcccgcac
cggaatggggaacaagccaagcaggagagcagctaccgtgggaagcgcacagagcagagc
ccctcgagggacacgtcccccgagttggaggtggcacatgtccacggcagccctgggaag
gaggagggggctctggaaaaccaagccatggctgccgacgctgcgcagccgccgccagac
agaccagtcgagaagaaatcttattcccgggcaagaaggaccagagtcaaggctggggaa
gcggggaagctggcagaggaagcgcccgcttccgagggggtggctcccgtgattccaaaa
cccacgccagccgagagctcccccccaccagccaagagcaactgggagtcgccagtggaa
tccagcgtggatggacttgagcaggagatgacccagatgaacctgacggagcagaactgg
agcccagggcagtcccagttcatcccgccccgggagctgaggggtattcccaaccatatg
cacgtgggaactgggccaccgccgcagtttaaccggatggaggagatggcagtgcagggg
ggccgtgtgaagcgctactcatcgcagcggcagagaccccccgtgccggagccagcgccc
cccatgcacatcagcatcatggaagggcactactacgacccactacaattccagggacca
atctacacccacggtgagaacccagccccgctgccgccccaagggatgattgtgcagccg
gagatgcaccttcctcatccaggtgaggagtcagtgggacacccctggacctggggaaca
gagaactctggtctcccacagcctctgtcgtttacacccccaccagacgccccctggcag
ctgctcactccgacttacttctccgcccctggagtgatgaattttgggaatcctggctac
ccctacccccctggagctctgccccctccgccccctcctcatctctattccaacacgcag
gcgcagtcccaggtgtatgggggggtcacctactacaacactgtccagcagcaggtgcag
cccaagccctccccgccccgccggacatcccagcctgtgaccatcaagccgccccctcca
gaggacagcaaaggtgaaaaatcaaaggagaggagcaacacgtag
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