KEGG   Corvus brachyrhynchos (American crow): 103624209
Entry
103624209         CDS       T08418                                 
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cbrc  Corvus brachyrhynchos (American crow)
Pathway
cbrc03440  Homologous recombination
cbrc03450  Non-homologous end-joining
cbrc04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:cbrc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103624209 (RAD50)
   03450 Non-homologous end-joining
    103624209 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    103624209 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbrc03032]
    103624209 (RAD50)
   03400 DNA repair and recombination proteins [BR:cbrc03400]
    103624209 (RAD50)
DNA replication proteins [BR:cbrc03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    103624209 (RAD50)
DNA repair and recombination proteins [BR:cbrc03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     103624209 (RAD50)
    BRCA1-C complex
     103624209 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     103624209 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook SMC_N AAA_21 AAA_15 SbcC_Walker_B DUF2703 NPV_P10 AAA_29 AAA_13
Other DBs
NCBI-GeneID: 103624209
NCBI-ProteinID: XP_008641643
UniProt: A0A091EBH6
LinkDB
Position
Unknown
AA seq 1312 aa
MSRIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRSMVCTQKGKTPEFKTLESVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VKSIESQLEPLKSSLAAVEQNLTKVMRLDNDVKALESRKQQMEKDNQDLQQKMEEVFQGT
DEQLRDRYQNHQRIVKEKEKRLLDCKRDLDRATKECQRFNSEKSELLIERGRLQLQADRH
QEHIVTRDSLIQSLAAQLELDGFERAPFTERHIASFRRLVKERQERDTEAANRMMREFAQ
KEAMKQKQVDEIRDKKTGLERTIELKSDIQSKKEAELKNVKCELQQLEGFSDRISELNEE
IGKTEHELEKAERNSNVETLEQEVQTLQNEKINLDKALRRLDQEMEHLNIHTTTITQMEM
LKKDKAEKEDQIRKVKSRHSEELTSLLGYFPNKKQLEDWLHGKNKKINQTRDTLANLNKQ
LASVEYDKTYASNELKKKEAQLSHHEAELFDVCGSQDFDSDLNNLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRQTVVELQDKEIPDLRNKIQNANRDLTGLRREIEEQESLLQTALS
EEEGAKARLQDITLMERYQTDIRDVERKIAQQEAKLLGVDLSRTVLQVSQEKQEKKHLWD
TVTGKIELNQKLKQDQQSQIQQLKSAVNELKAEKLQIVSSMQRRQQLEEQTVELTTEVQS
LYREIKEAKEQVLPLDAMLEKLQQEKEDLVNKRTASNKETQEKMNGINEKVKDINTYMKE
IENYIQQGKEDYKKQKESELDEVNSHLAACEKQKEKISKEMEMTRQDIDTQKIQERWLED
NLTLRRRNEELKEVEDNIKQLTKEMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRG
FEEEIVRFRKELREPQFKDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDADENVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIVKCSVSSLGSYVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcgaggattgaaaaaatgagtatcctcggagtgaggagttttggggtagaggataaa
gacaaacaaattatcactttctttaatccattaactattttggtgggaccaaatggtgca
ggaaaaacgactatcattgaatgtcttaaatatatatctactggtgattttcctcctggc
accaaaggaaaaacatttgttcatgatccaaaggttgccaatgaaaccgacgttagagct
cagattcggttacagtttcgagatgtcaatggggaactcgtagctgtccagcgctccatg
gtctgtacccagaaaggcaagacgccagagtttaaaacactggaatctgtcattactaga
acaaagcatggcgagaaggtcagtctgagttccaagtgtgccgaaatagatcgggaaatg
atcagcgccctcggtgtttccaaatctgtgcttaacaatgtcattttctgtcaccaagaa
gaatccaactggcctttaagtgaagggaaagccctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtatatcaaagcacttgaagctctgcgtcaggtacgactgaaacaaagc
ttgaaagtaaaggagtgtcagacagaactgaaatatctaaaacagaataaagagaaagca
caggaaatccaggatcatctcagcaatagagaagctcagctggctgcttctaaggagaat
gtaaaatcaattgagagccagcttgagcctctaaagagttctctggcagctgttgaacag
aatctcacaaaagtaatgaggttggacaatgatgtgaaggcccttgagagcagaaagcag
cagatggaaaaagataatcaagatttgcaacagaagatggaagaggtttttcaaggaacg
gatgaacaactaagggatagataccagaaccaccagagaatagtgaaggagaaggagaag
agattgttggactgtaagcgtgatttagatagagccactaaagagtgccagagatttaac
agtgaaaaatcagagctgcttattgaacgaggtcgtcttcaactgcaggcagatcgtcac
caagagcacattgtgaccagggattccttaattcagtctctggcagcacagctggaattg
gatgggtttgaacgagcacctttcactgaaaggcacattgccagttttcgcaggctggtg
aaggagagacaggagagagatacagaagctgcaaatcgtatgatgagagaatttgcacag
aaagaagcaatgaaacaaaaacaggtagatgaaataagagacaagaaaactggattagaa
agaaccattgagctgaaatcagacattcaaagtaagaaagaagcagagctgaagaatgta
aaatgtgaattgcagcagttggaggggttttcagacagaattagtgagttgaatgaggaa
attggcaagacggaacatgagctggagaaggctgagaggaacagtaatgtagaaacactc
gaacaggaagtacagactctgcaaaatgagaaaataaacctggacaaagctcttaggagg
ttggatcaagagatggagcacttgaatatacacaccacaacaattacccaaatggagatg
ctgaagaaagacaaagcagagaaagaagatcagattagaaaagtaaaatcaagacattct
gaggaactaacatcactgctgggatacttccccaataaaaaacaacttgaagactggctt
catggtaaaaataaaaagattaatcagacaagggatactcttgctaatcttaacaagcaa
ctggcatcagtagaatatgataaaacttatgccagtaatgagctaaaaaaaaaagaagcc
cagttgtcccatcatgaagcagaactttttgatgtttgtggaagtcaagattttgacagt
gacctgaacaaccttcaagatgaaattgaaaaaagttccaaacagcgagctgtccttgct
ggagccacggcagtttattcacagttcattacacaactgacagaggagaaccagtcttgt
tgcccagtttgccaaagagtttttcagacagaggctgaactgcaagatgtcattagtgat
ctgcagtctaaactgcgccttgccccagacaaactgaagtcaacagaatctgagcttaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaaccactgcggcaaactgtagtt
gaactccaagataaggaaattccagacctgaggaacaagatccagaatgcaaacagagat
ttaacaggcctgaggcgtgagatagaagaacaggaatcactcctgcagacagctttgtct
gaggaagaaggtgccaaagcacgtttacaggatataactctgatggaaaggtaccagact
gatattagggatgttgaacgaaaaattgctcagcaggaggctaagctgctaggggtcgat
ttaagtagaactgtgcttcaagtaagccaagaaaaacaagagaaaaaacacttgtgggat
acagttactggtaaaattgagttaaatcaaaaactcaagcaggaccagcaaagccagatt
cagcagctgaagagtgcagttaatgagctcaaagcagagaagctgcagattgtcagcagc
atgcagcggcggcagcagctggaggagcagactgtggagttaaccactgaggttcagtcc
ttatacagagagatcaaggaagcaaaagagcaggtacttcctttggatgccatgttagag
aaattacagcaggagaaggaggatctagtgaataaaaggactgcaagtaataaagaaaca
caagagaagatgaatggcataaatgagaaagttaaagatataaacacgtatatgaaagaa
attgaaaactatattcaacaaggaaaagaagactataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcatttggctgcctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgacccgacaagatattgacactcaaaagatacaggaaagatggctggaggat
aatctcactttgaggaggcggaatgaagagctaaaagaagttgaagacaatataaaacaa
cttacaaaagagatgggagaaatgaaagtcccccagatgaaaaatgaacaaaaacatctg
gaggagaaaatagaatctctgaaaaggaaccatcacgttgcacttggccgccagcgtggg
tttgaggaggagattgttcgctttagaaaggagctcagagagccacaattcaaagatgca
gaggaaaaatacagggacatgatgattgtcatgagaacaacagagctggtgaacaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaaaatg
gaagaaatcaacaaaataattcgagacctgtggcgaagcatttacagaggacaagatatt
gaatatatagaaattcgctctgatgcagatgagaatgtctcagccactgacaaaagaaga
aattacaattacagggtagtaatggtgaagggagatacagcactggatatgcgaggaaga
tgtagtgctgggcaaaaggtgcttgcttctctcatcattcgccttgctctagcagaaaca
ttctgtctcaactgtggcattctggccctagacgagcctacaaccaaccttgaccgagaa
aacattgagtccctggcacatgccctggtagagataataaagagtcgcttacaccaacgc
aactttcagcttctggtgattactcacgatgaagattttgttgaacttctgggccgttct
gagtatgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcgtg
aaatgcagtgtcagctccctaggctcctatgttcattag

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