Corvus brachyrhynchos (American crow): 103624668
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Entry
103624668 CDS
T08418
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103624668 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbrc03021
]
103624668 (TAF5)
03036 Chromosome and associated proteins [BR:
cbrc03036
]
103624668 (TAF5)
Transcription machinery [BR:
cbrc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103624668 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
103624668 (TAF5)
Chromosome and associated proteins [BR:
cbrc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103624668 (TAF5)
STAGA complex
103624668 (TAF5)
TFTC complex
103624668 (TAF5)
SAGA complex
103624668 (TAF5)
SLIK complex
103624668 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIID_NTD2
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR55
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_VPS8
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_Nup120_160
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_SCAP
CDK5RAP3
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
103624668
NCBI-ProteinID:
XP_017581370
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MRGNAAEHTGKCSSKERVAAPPRIPGVAAVAAVPPGKVGGAVVVEDQPDVSAVLSAYNQQ
GDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHESEAKSFFERFH
GDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQ
IWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGLLKEPEFDVPLDD
EDEEGENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPELKDSDKLDKVMNMKEAA
RRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVWSVTPKKLRSVK
TAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPDRNYLLSCSEDGTVR
LWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLA
DVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKVKADHFIHWHFHLMGDSWL
LEQQMEEFCCGILDMA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgggaacgccgcggagcacactgggaaatgtagttctaaagaacgcgtggctgcc
ccaccgcgcatccccggggtggccgcggttgccgccgtgccgccggggaaagtcggaggc
gccgtggttgtggaggatcagccggatgtgagcgcggtgttgtcggcctacaaccagcaa
ggggacccgacgctgtacgaggagtactacagtggattgaaacacttcatcgagtgttcc
ctggactgtcatcgggcggaattgtctcagctcttttatcctctctttgtgcacatgtat
ttggaattggtctacaatcaacatgagagtgaggcaaagtctttttttgaaagatttcat
ggggatcaggagtgctattaccaggatgacctgcgtgtattgtcgagcttaaccaaaaaa
gaacatatgaaaggtaatgagaccatgctggatttccgaacaagcaagtttgtgctgcgc
atttcccgtgactcttaccaactcttgaagaggcatcttcaggaaaagcagaacaatcag
atctggaacattgttcaggagcatctttacattgatatctttgatggaatgcctcgcagt
aaacaacagatagatgctatggttggaagcttggctggggaggcaaaacgagaggctaat
aaagcaaaggtttttttcggcttacttaaagaaccagagtttgatgtgcctttggatgat
gaagatgaagaaggagaaaatgaggaaggaaagccaaagaagaaaaaacctaaaaaagat
aacgtagggtcaaaaagtaaaaaacaggaccctaatgctcctccccaaaacagaattcct
ctgcctgaactgaaagactctgacaagctggataaagtaatgaatatgaaggaagcagca
aggcgagtgcgtcttggaccagagtgcctgccctccatctgtttctacacattccttaat
gcttaccagggtctgactgcagtggatattacagatgactccagcatgattgtaggaggc
tttgctgactctactgtcagagtgtggtctgtgactccaaaaaagctacgtagtgtaaaa
acagcagcagacctcagtctcattgacaaagaatcagatgatgtcttggagaggatcatg
gatgaaaaaacagcaagtgagttgaagattttatatggtcacagtggacctgtctatggc
accagcttcagtcctgataggaactatctgttgtcctgttctgaggatggcactgtgaga
ttgtggagtctccaaacattcacgtgtttggtgggatataaaggacataattatccagtt
tgggatacacagttctctccttatggttattactttgtgtcagggggacacgacagagtg
gctcgtctgtgggcaacagatcactaccagccattacggatctttgctggccatcttgca
gatgtgacgtgtacccgatttcatcccaactccaactatattgctacgggctcagcagac
aggactatacggctctgggatgttttgaatgggaattgtgtaagaatattcactggacat
aaggtaaaggcagatcacttcattcattggcattttcacctaatgggcgattcctggcta
ctggagcaacagatggaagagttctgctgtgggatattggacatggcttga
DBGET
integrated database retrieval system
