Culicoides brevitarsis: 134829345
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Entry
134829345 CDS
T10947
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cbri Culicoides brevitarsis
Pathway
cbri03018
RNA degradation
Brite
Enzymes [BR:
cbri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134829345
Messenger RNA biogenesis [BR:
cbri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
134829345
Spliceosome [BR:
cbri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134829345
Complex C
U4/U6.U5 tri-SnRNP related factors
134829345
Ribosome biogenesis [BR:
cbri03009
]
Eukaryotic type
Pre-60S particles
Helicases
134829345
Transfer RNA biogenesis [BR:
cbri03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
134829345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Death_3
Motif
Other DBs
NCBI-GeneID:
134829345
NCBI-ProteinID:
XP_063698459
LinkDB
All DBs
Position
2:complement(11560135..11569027)
Genome browser
AA seq
1041 aa
AA seq
DB search
MADLDDIFDCFDENQPEEVQATGPVVVEDDVAMTEKDFKPEVIAEAGDLDESLAKRKHDA
TKTESDDDDTSKKLKVVESVLDDINLDGVVSHITTHTLLTPEACTHEVAIYPGQTLQPLL
PPTGPPAKEYSFKLDPFQREAILCIENNQSVLVSAHTSAGKTVVAEYAIARSLAAKQRVI
YTTPIKALSNQKYREFQEEFTDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREC
GWVIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHLHRQPCHV
VYTDYRPTPLQHYLFPAGGDGIHLVVDEKGSFKEENFNKAMSVLQNAGEASKGDQKGRKG
GLKASNSGETNIYKIIKMIMERKYAPVIIFSFSKKDCELYAMALSKLDFNTQEEKKMVDE
VFNNAMDVLSEEDRQLPQVQNVLPLLRRGIGIHHGGLLPILKETIEILFGEGLLKALFAT
ETFAMGLNMPARTVLYTSPRKFDGRDFRWLTSGEYIQMSGRAGRRGLDDKGIVILMIDEK
VSTTAAKDIVQGKPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQASIPDKY
KSVQELQKKVEDFAIEDETSVASYHHIRDQLDILGKQFRQWITKPQYLIPFLQPGRLVKI
QFEDQEFDWGMIVNFKKDVGDDKKNPLKNETKLFIDVLLHLDGKQSDDEKLRPCPAGKRG
EAEIIPCLSSLITKISSIRIHHSNDLRPKEQRLKVVKNIEEVKERFKSKSQTIPLLHPVN
DMHIKDKEFKTCIDRIEDFEKKLFAHPLHNSPKLDSLYEQYLAKLKMENELKAAKQEFRE
AKSVLQMDELKYRKRVLRRLGYCTAADVIEFKGRVACELSAADELLLTEMIFNGTFNSLT
PQQCASLLSCFVCDEKSSESTTTAEELSGPLRQMQDLARRIAKVSRECKMELDEEAYLEK
FKPSLMDVVLAWCKGSSFADLCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNVDLEN
KFTDAGRLLKRDIVFAASLYL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcagatttggacgatatttttgactgttttgacgaaaatcaaccggaggaagtgcag
gcaactggacctgttgtcgtagaagatgacgttgcaatgaccgagaaagacttcaagcca
gaagttatagcagaagcgggtgatttggatgaatctctggcaaaaaggaagcatgacgcg
acaaaaacggaatccgatgatgatgatacgagtaagaagttgaaggttgtcgagagcgtg
ttggatgatatcaacttggatggcgtcgtttcccacatcacgacacacacccttttaacc
ccggaagcatgcacgcacgaagtcgcaatttatcccgggcaaactcttcaacctttactt
ccgccaacgggtcctcccgccaaggaatacagcttcaaactcgatcccttccaacgtgaa
gccattttgtgcatcgagaacaaccaatcggtccttgtgagtgctcacacctctgctggc
aagacagtcgttgccgaatacgccatcgcccgttctcttgccgccaaacaacgtgtcatc
tacacaactcccatcaaggcgctttcgaaccaaaaatatcgcgaatttcaagaagaattc
acagatgttggtctcgtaacgggcgacgtcacgatcaatccttccgcctcgtgtctcatc
atgacaacagaaatcctgcgaaacatgctttatcgcggcagtgaaattatgcgggaatgc
ggttgggtgattttcgacgagattcattacatgcgtgacaaggaacgaggcgttgtgtgg
gaagaaacgctcattttgctgcccgataacgtgcattatgtctttttgtcggctaccatt
ccgaatgcacgtcaattcgccgagtgggtttgtcatttgcatcgtcagccgtgtcacgtg
gtgtacacagattatcgtccgacgccgttgcaacactatttgttccctgccggaggcgac
ggaattcatcttgtggtcgacgaaaagggcagcttcaaagaggaaaacttcaacaaagcc
atgagtgtgctccaaaatgccggagaagcgtcaaaaggcgaccaaaaaggcagaaaaggc
ggattaaaagcctcaaattcgggcgaaacgaacatttataaaatcattaaaatgataatg
gaacgaaaatacgcgcccgtcatcattttttccttcagcaagaaagattgcgaactttac
gccatggctttgtcgaaattggactttaatacgcaagaagagaagaaaatggttgatgag
gttttcaataacgccatggatgttttgtcggaagaagatcgccaattgcctcaggttcaa
aacgttctcccgttactgcgtcgcggaatcggcatccatcatggcggattattgcccatt
ttaaaggaaacaatcgaaattctcttcggcgaaggtctcttaaaagctcttttcgctacc
gaaacattcgccatgggtctcaacatgcctgctcgcacggttctttacacttcgccacgc
aaattcgacgggcgcgatttccgctggttaacttccggcgaatacattcaaatgtcgggt
cgtgccgggcgtcgtggtctcgatgacaaaggtatcgtcatcctcatgatcgatgaaaaa
gtctcaacaaccgccgcaaaagacatcgttcaaggcaaaccggatcccatcaattcggca
ttccacttgacgtacaacatggtcctgaatttgttgcgtgtcgaggaaattaatccggaa
tacatgctggaacgatctttcttccagttccagaatcaagcttccattccggacaaatac
aaaagtgtgcaggagttacagaagaaagttgaggattttgcgatcgaagacgagacttcc
gtggcgtcatatcatcacatcagagaccaacttgacatactcggaaaacaattccggcaa
tggataacaaaaccgcaatatttgattccgtttttgcaaccgggacgtttggtgaagatc
caatttgaggatcaagagttcgattggggcatgatagttaatttcaagaaagacgtcggc
gatgacaagaaaaatccgttgaagaacgaaacgaagttgtttattgacgttttgctgcat
ttggatggaaaacaatcggatgacgagaaacttcgtccttgcccggcgggaaaacgagga
gaagctgaaataattccttgtctctcgtcgctaattacgaaaatcagtagtattcgtatt
catcactcgaacgacttgagaccgaaggaacaacgtttaaaggtcgtcaaaaacatcgaa
gaagtaaaggaacgttttaagagcaaaagtcaaacaattcccttgctacatcccgtcaac
gacatgcacatcaaagacaaagagttcaaaacgtgcatcgatcgcatcgaagatttcgag
aaaaaactattcgcacatccgctacacaattccccgaaactcgactcattatacgaacaa
tatttagccaagctcaagatggaaaacgaactcaaagccgccaaacaagaatttcgcgaa
gcaaaatccgtgttgcaaatggacgagctcaaatatcgcaaacgggtccttcgtcgcttg
ggatattgcaccgcagctgacgtcatcgagttcaaaggtcgtgtcgcatgcgaattaagt
gctgccgacgaacttttactcaccgagatgatttttaacggaacttttaacagtttgacg
ccacagcaatgcgcttcgttgctttcttgtttcgtttgcgacgaaaaatcctccgaaagt
acgacgacagctgaggaactttcgggcccgttgcgacaaatgcaggacttggcacgacgc
attgccaaagtttcgcgcgaatgcaagatggaattggacgaggaagcgtatttggagaaa
tttaagccgagtttgatggatgtcgtgctggcatggtgcaaaggttcatcatttgcggat
ttgtgcaagatgacggacatttttgagggttcgattattcgatgcatgcgacgattggag
gaattgctgcgacaaatggtgcaggcaagcaaaaccattggcaacgtcgatttagagaac
aaatttactgatgcaggacgactactgaagcgagatattgtctttgctgcttcactttac
ttgtaa
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