Culicoides brevitarsis: 134829927
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Entry
134829927 CDS
T10947
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cbri Culicoides brevitarsis
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbri03041
]
134829927
Enzymes [BR:
cbri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134829927
Spliceosome [BR:
cbri03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
134829927
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_30
Phasin
AAA_19
Motif
Other DBs
NCBI-GeneID:
134829927
NCBI-ProteinID:
XP_063699295
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All DBs
Position
2:complement(37446289..37448775)
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AA seq
717 aa
AA seq
DB search
MSSESKPVGQDIDSKIRTIDVEIDRNVSFEQLMLSPSIIAGLTRNNFIYPSPIQLKAIPL
ARCGKDLFVQAKSGTGKTLVFVVAILERALEKSFNGVQSLVVVPTREIALQIVSVIEAVA
KNVQNFSVVPCIGGTEILKDRQKIANARCCVGTPGRVLHLIRNRTLNPETIKLVVLDEAD
KLLADSFSADVREIMKSAAKREQTLIVTATLDQKAQNEFLVFMKNPLGVTPKKEAPILVG
ITQFIYQLPKMENVVEEMQKKLEALVKVLQXVDYNQCLIFTNSQSRAESFANGLHEKGFL
AEFISGALDQNTRTKVFERIQQSPNCRIIVTTDLLARGIDAERVNLVVNMELPPDQFCYL
HRIGRAGRFGSLGTAITFASVGEELLKFRSVLYDEEYPVFKVIPGEEDKLAKAIEDKDVE
KVFEPLVKVNEKMEKSSQENVSEEISIKKDEKPSNVDDSSSKLKNIFNLYEDFILKGAKV
DPETEEILSKVPKPVINTSNNIFLQKIVELNLYGDDEKIEPHKNLEDSPTKSDDSTKSIK
DSSTTTDDLQESDINAELNDDNLNTESINDRVDAFLENLDNVSQDIPASQGSVTSGKTYT
VTQRGFDDDQSSSSSETETNSTASNRGSPSYQYGIDDDSNSETEDEDDEDLEDEEEFFEA
TDHHPTQNSHKVHQSNSAMSFHSNRQAYNRWTAMYWSQASQIADYVNHWRFVQNQGY
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagaatccaaaccagttggacaagatattgacagcaaaattcgcacaattgac
gtcgaaatcgaccgaaatgtctcctttgagcaactcatgttgagtccttcgatcattgcc
ggtttgactcgcaataatttcatctacccttcgccgattcagttaaaagccattcctctt
gctcgttgcggcaaagatttattcgttcaagcaaaatccggcaccggaaaaactttagtt
tttgtcgtggcaattctcgaacgtgctttagagaaatccttcaacggcgttcaaagcttg
gtcgttgtcccgacacgagaaattgcgctccaaatcgtttctgtgatcgaagctgtcgcc
aaaaacgttcaaaatttcagcgtcgttccctgcattggcggcacagaaattctaaaagat
cgtcagaagatcgccaatgctcgttgttgcgtcggaactcccggtcgagtgcttcatttg
atccgaaatcgaactttgaacccggaaaccatcaaattagtcgttctcgacgaagcggat
aagctcttagctgactcgttttccgctgacgtgcgtgaaatcatgaaaagtgccgcaaaa
agggagcaaactttgattgtgacagcaactttggaccaaaaagcgcaaaatgagttcctt
gttttcatgaaaaatccgctcggcgtgactccgaagaaggaagctcccattctggttggt
attacgcaatttatttatcaacttccgaagatggaaaatgtcgtcgaagagatgcaaaag
aagctggaagctcttgtaaaggttttacagnctgtcgattacaaccaatgcctaattttc
acaaattcccaaagtcgtgcggaaagtttcgccaacggattgcacgaaaaaggcttttta
gcggaatttatttcgggagctcttgatcaaaatactcgaacaaaggtttttgaaagaatt
caacaatccccaaactgtcgaattatagtgacaactgacttgttagctcgcggaatcgac
gccgaacgcgttaatttggttgtaaacatggaattacctccggatcagttctgttatttg
catcgcataggcagagcaggcagatttgggtcccttggcacagcaataacattcgcttca
gtcggagaagagctcctgaaattccgtagcgtgttgtacgacgaagaatatcccgttttc
aaggtcattccgggcgaagaagacaagttagcgaaggctattgaggataaagacgtcgaa
aaagtgtttgaacccttggttaaagtcaatgaaaagatggaaaaaagctcccaagaaaat
gtttcagaagaaatttccattaaaaaagacgaaaaaccatcaaacgttgacgattcaagc
tcaaaactgaaaaatatcttcaacttatacgaagatttcatactaaaaggagcaaaagtc
gacccagaaaccgaagaaatcctttcaaaagtacccaaacctgtgattaatacttccaac
aacatttttctacaaaaaatagttgagctgaatctctatggagacgatgaaaaaatcgaa
ccccacaaaaatctcgaggatagtccaacaaaaagtgatgattcaaccaaatccattaaa
gattcaagcactactaccgacgatttgcaagaaagtgacataaatgccgaattaaatgat
gataacttaaatacagaatccattaacgatcgagtcgatgcctttttggagaacttggat
aacgtttctcaagacatcccggcttcacagggttctgttacgagcggaaaaacttataca
gttacccaacgcggttttgacgacgatcaaagttcatcatcatctgaaacagaaactaat
tcaacggcatccaatcggggatcaccttcgtatcaatatggcatcgatgatgatagtaac
agtgagactgaagacgaagacgatgaagatttggaagatgaagaagaattctttgaagct
acagatcatcatccaactcaaaattctcataaagtacatcaaagtaactcagcaatgtcc
tttcactcaaatcgccaagcctacaatcgctggaccgcaatgtattggagtcaagcatca
caaattgctgactacgttaaccattggcgattcgttcagaatcagggatattaa
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