Culicoides brevitarsis: 134830001
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Entry
134830001 CDS
T10947
Name
(RefSeq) enhancer of mRNA-decapping protein 4 homolog isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cbri Culicoides brevitarsis
Pathway
cbri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134830001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbri03019
]
134830001
Messenger RNA biogenesis [BR:
cbri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134830001
mRNA degradation factors
5'-3' decay
Decapping complex
134830001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_EML_2
WD40
ANAPC4_WD40
PUMA_CC
Amj
Motif
Other DBs
NCBI-GeneID:
134830001
NCBI-ProteinID:
XP_063699400
LinkDB
All DBs
Position
2:22163395..22168612
Genome browser
AA seq
975 aa
AA seq
DB search
MESSEVDIVVFDKSTVNELEICEIKRQDTVILRDSVDTPMSSSKVKLKNIVDYKWETKPY
TGRLVAAHKCGNIIAYTIKAKNHEKIEGMIRIVNVENGKRTLLKGMNSEALDLEFAFLDD
LILLAYINDSTLYVQKIEESDDQLSSSIVLQLENGIEHVNTYDKVTWCPYIPESAFESDT
YASQLLTWSRGSTFHCYSITDITWKYGNGPHKASDIEEGSLTFKELKSNILDIGFSPDGT
TLATCTQDGYVRFYQVYLHSLDGTPRRLHEWIPHDGKPVKKIMFLDNLNQNTTDEPLWKN
AITFSEEKCEIKLWCCETWKCLQSIAFRNLIDVPVHLSLGLDKTASYMVVSDMYDQQMYV
FHIDKSIVNTSENQDKKTCIKSVAKFPLASQILSFDIVSANVQENKSSLSDAYITNEIDE
YDDDTNNTQCIVLKMFLVQPKSVQECNLFYNQIAVQDVQNRNDATIGEVEKNEKQMILNE
GSKDTNQDNNQNFGIIKNSPIPTEKHDDVSGKSSPSREVEKILNEVDTYEKYFEAVTETI
LEVKNIETDVAVSEKEQKNDYTNKEIQISNSDFNIPTLSTLFLNQSKQLNDMKETINAIQ
KNMEMINQQAKYSNSLFKTTDNTNDDHTINKIEKLINNTKSEITSHLEGSLSENLKNIVK
TLDNSISLQMQKVSKDINSQIDTKFRSYIEKENVKTKKLGDNKMDINMTIEKTISTLISN
SLIPSFETISKEMIFQFNKTIMSTTQEYTKLFEKHAKFNTLTNDSSEQFLLKSQQNLMKT
EEVLKLNLNSLSKDIKTMEAHISRTIKDQIKNEVQKQFLEQTSAIRSSVLSAVRTQTPVP
SSQNIQSNICRLLDQGQINKAFHLALIANDLTLVEYTIKKADFDTVFHPCNLEQTVLLSL
IQQLSADMKQHSELKQKYLAEAIINLNLEDSSIKEHAPRIMTELRQNCKTFVAENPNNYL
TSYVKMLILASQSVA
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggaatcttctgaagtagatattgttgtatttgataaatctactgtaaatgaacttgaa
atatgtgaaataaaacgacaggatactgttatactacgtgattctgttgatacacctatg
agctcatcaaaagtaaagctcaaaaatatcgtcgattacaaatgggaaacgaagccttat
actggaagattggttgctgcacataaatgtggaaacattattgcttacaccattaaagcg
aaaaatcatgaaaaaattgaaggaatgattcgaatagtcaatgtagaaaatggaaaacga
acactgttaaaaggaatgaatagtgaagcacttgatctagaatttgcatttctagatgat
cttatactacttgcttacataaatgattcaacattatacgttcaaaaaattgaagaatct
gacgatcaactttcatcttcgatagtgctacaattagagaatggcatagaacacgtaaac
acttacgacaaagtaacttggtgtccctatattcctgagtcagcctttgaaagcgatacc
tatgcttcgcagttattgacgtggtcaagaggctctacttttcattgttatagcataact
gatattacatggaaatatgggaatggtcctcacaaagcttccgatattgaagaaggcagc
ttgacttttaaggaattaaagtcaaatattctagatattgggttttcgccagacggaact
actctagctacttgcacacaagatggatatgttaggttttatcaggtctatcttcattcg
ttagatggtacgccaagaagattacacgagtggatacctcacgatggtaaacctgttaaa
aaaatcatgtttttggacaatttaaaccaaaatactacagatgagccattgtggaaaaat
gctatcaccttctcggaagaaaaatgtgaaataaaactttggtgctgtgaaacatggaaa
tgtctgcagtccattgcgtttcgaaaccttattgatgtaccagttcatttgtctttgggt
ctggataaaactgcttcatatatggtagtttcagacatgtatgatcaacagatgtacgtt
tttcacatagataaaagtatcgtcaatacttcggaaaatcaagacaaaaaaacgtgtatc
aaatctgttgctaaatttccacttgcctcacagattcttagttttgatattgtaagcgcc
aatgttcaggagaacaaaagtagtctaagcgatgcttatattacaaatgaaattgacgaa
tatgacgatgacactaataatactcaatgtattgttctaaaaatgtttctagttcaacct
aaaagtgtccaggaatgcaatctcttctataatcaaattgctgtacaagatgtacaaaat
agaaatgatgcaactattggtgaagtagaaaaaaatgaaaaacaaatgatcctaaatgaa
ggatccaaagataccaatcaagataataaccaaaactttggtattattaaaaacagtcca
attccaacagaaaagcacgatgatgtaagtggtaaatcaagtccaagtagagaagttgaa
aaaattctaaatgaagttgatacatatgaaaagtatttcgaagcagttacagaaactata
ttagaagttaagaacatagaaactgatgtagcagtgtcagaaaaggagcaaaagaatgat
tacacaaacaaggaaattcaaatatcaaacagtgattttaacataccaactttgtctact
ttgtttcttaaccaatctaagcaattgaatgatatgaaagaaacaattaacgcaatacaa
aaaaacatggaaatgataaatcagcaagcaaagtattcaaattcattgtttaaaacaacc
gataacacaaatgatgatcacacaataaataaaattgaaaaactgataaataatacaaag
agtgaaattacaagccatctagaaggatcacttagtgaaaatttgaaaaatatcgtaaaa
acattagataattctatatcattacaaatgcaaaaagtttcaaaagatataaattcgcaa
attgatactaaatttagatcatatattgaaaaggaaaatgtaaaaacgaaaaaactggga
gataacaaaatggatataaatatgacgattgaaaagacaatctctacgttgattagtaac
tctctgattccatcatttgaaactatttcaaaagaaatgatatttcaattcaacaaaaca
ataatgtctaccacgcaggaatatacaaaactttttgaaaaacatgcaaaattcaataca
ttgaccaacgattcatcagaacagtttctattaaagtcgcaacaaaacttgatgaaaaca
gaagaagtattaaaactcaatttaaattctttgtcaaaagatatcaaaacgatggaagct
catatttcaagaacaatcaaagatcaaatcaagaatgaagttcaaaaacaattcctagag
cagacgtctgccatcagaagttcagtattgtctgccgttcgaacacaaacaccagttcca
tcatctcaaaatatacagagtaacatttgtagattgttagatcaaggtcaaataaataaa
gcttttcacttggctctgattgcaaatgatctcacattagtagaatacactattaagaaa
gctgattttgatacagtatttcatccatgtaatttagaacaaacggtgcttttgtcactt
attcagcagctatcagccgatatgaaacaacattctgaattgaaacaaaaatacttagcg
gaagcaatcataaatttaaatttagaggactcttctattaaagaacatgctccaaggatt
atgactgagcttcgtcagaattgtaaaacgttcgtcgctgaaaatccaaataactatttg
acaagctacgtgaaaatgttaattctggcatcacaaagtgtcgcataa
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