Culicoides brevitarsis: 134830130
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Entry
134830130 CDS
T10947
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cbri Culicoides brevitarsis
Pathway
cbri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134830130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbri03041
]
134830130
Enzymes [BR:
cbri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134830130
Spliceosome [BR:
cbri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134830130
Complex C
U4/U6.U5 tri-SnRNP related factors
134830130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134830130
NCBI-ProteinID:
XP_063699580
LinkDB
All DBs
Position
2:19389077..19392560
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AA seq
887 aa
AA seq
DB search
MPRDRRRKYSSSSSEDSEEERRKKENKDIKDFSERLKAKDEEKTRKVVTAGTSKAFEEAA
KRLKLELDDKDKVVPQLRIQSRREYLAKRKEDKVQELEADIIDDEFLFKEEELTAREREE
RAHKKRLLEIAKEHEKARELEKVQRYHMPKDIKDADKNAYIEVDETEKFPNSEQKKWESE
KFAAATYRFGAKDADAQQEYELLLDDQIEFINPLRMEGTEKKDKEPKLTEKEKKKMNIEE
TKKSLPIFPFKEDLIAAINEYQVLIIEGETGSGKTTQIPQYLYEAGFTEGDKKIGCTQPR
RVAAMSVAARVAEEMGVKLGNEVGYSVRFEDCTSERTVVKYMTDGTLHREFLSEPDLASY
SVMIIDEAHERTLHTDILFGLVKDIARFRKDLKLLISSATLDAAKFSGFFDEAPIFRIPG
RRYPVDIYYTKAPEADYIDACVVSVLQIHATQPLGDILVFLTGQEEIETCFEMLQDRTKR
LGSKIKELLILPIYANLPTDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPGF
AKQNNFNSRTGMETLTVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYKHELEDNTVPE
IQRINLGNAVLMLKALGIHDLLHFEFLDPPPQETLVIALEQLYALGALNHHGELTMTGRK
MAEFPVDPMMAKMLIASEKYKCAQEIATISAMLSVNSSIFYRPKDKIVHADTARKNFFHM
HGDHLSLLQVYTQWADTEYSTQWCYENFIQYRSMKRARDVRDQLVGLLERVEIPLLSSME
EMVNIRKAITAGYFYHIAKLSKSGNYKTAKSNQTVMVHPNSALFEQLPRWVLYHELVFTT
KEYMRQVLEIESKWLLEVAPHYYKEKDIEDSTNKAMPKVVGRSKMTV
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtgatcgtagaaggaagtacagttccagctcgtctgaggacagtgaagaagag
cgtcgcaaaaaggaaaacaaggacattaaagacttttcggagcgattaaaggcgaaagat
gaagaaaaaactcgcaaagtggtcacagcgggcacaagtaaagccttcgaagaagctgcg
aaacgcttaaaactcgaactagatgacaaagacaaagttgtgccgcaacttcgaatccaa
tcacgtcgcgaatacctcgcaaaacgcaaagaagacaaagtccaagagctcgaagcggac
atcattgacgatgaatttctgtttaaagaggaagaactgacggcgcgcgaacgcgaagaa
cgtgcccacaaaaaacgtttgctcgaaatcgcgaaagagcacgaaaaagcgcgtgaattg
gaaaaagtccagcgatatcacatgccaaaagacatcaaagatgccgataaaaatgcctac
attgaagtagatgagaccgaaaaattccccaattccgagcagaaaaagtgggaaagtgag
aaatttgctgctgcgacttatcgattcggagcaaaagatgccgatgcgcaacaagaatat
gagttgctgttggacgaccagattgagtttataaatccgttgcgaatggaaggcacggag
aaaaaggataaggaaccaaaattgacggaaaaggagaagaaaaagatgaatatcgaagaa
acgaagaaatcgcttccgatatttccgtttaaagaggatctcattgctgccattaacgaa
tatcaagtgttgattatcgagggagagacgggatcgggcaagacaacgcagattccgcaa
tatttgtatgaagctgggtttactgagggtgataaaaagatcggttgcactcaaccacgt
cgtgtcgccgcaatgtccgtggcagcgcgtgtcgccgaagaaatgggcgtcaaactaggc
aacgaagtcggctattccgtgcgtttcgaagattgcacctcagaacgaactgtcgtcaaa
tacatgactgacggtactttgcatcgtgaattcctctcggaaccagatttagcatcgtac
agcgtcatgattatcgacgaggctcacgaacgtaccttgcacaccgacatcctgtttgga
ctcgtaaaagatatcgctcgctttcgcaaagacttgaaactgttaatttcctctgcgact
ctcgacgctgccaaattcagtggatttttcgatgaagctccaatttttaggattcccggt
cgacgatatcccgtcgatatttattacacaaaagcaccggaggcggattacattgatgcc
tgtgtcgtatctgtgttgcaaattcacgccacgcaaccactgggcgatattttggttttt
ttgacgggacaggaagagatcgagacatgttttgaaatgttgcaggacagaacgaagaga
ttaggatcaaaaattaaagagctactgattttaccgatttacgccaatttaccgactgac
atgcaagcgaaaattttcgagccaacaccgcccaacgcgagaaaagtcattttagccaca
aatatcgcggaaacgtcgttaactattgacaacattatttacgttatcgatcccggtttc
gccaaacaaaataatttcaactcacggacgggtatggagacgctcacggtagttccgatc
agtaaagcatccgccaatcaacgagctggtcgtgctggaagagttgctcccgggaaatgt
ttccgtctttacaccgcttgggcatacaaacacgagctcgaggacaatacagtgccggaa
attcaacgaatcaacttgggaaatgccgttttgatgttgaaagcgctcggaattcacgat
ttgcttcattttgaatttctggatccgccgccgcaagaaactctggtcatcgcactggag
caactttatgccttgggcgcgctaaatcatcatggcgaactcacaatgactggcaggaag
atggcagaattcccggtggatccaatgatggcgaaaatgttgatcgcatcggaaaaatac
aagtgcgcccaggaaattgccacaatttctgcgatgttgtccgttaatagcagcattttc
tatcgtccaaaagataaaatcgtgcatgccgatacagctcggaaaaatttctttcacatg
catggcgatcacttgtcgctgctgcaagtttacacacaatgggctgacacggaatacagt
acgcaatggtgctacgagaattttatccagtatcggagtatgaaacgggcacgcgatgtg
agagatcagctcgtgggacttctggaacgtgtcgaaatccccttgttgtcatccatggag
gaaatggtgaacatcagaaaagcaattaccgcggggtacttttatcacattgcaaagttg
tcaaaaagtgggaattataagaccgcgaagagcaatcaaacggtgatggttcatccgaat
tccgcactttttgaacaactgccaagatgggttttgtatcacgagttggtctttacgacg
aaagagtacatgagacaagtgctggaaatcgagagtaaatggctgttggaagtggcgccg
cattattacaaagagaaggatatcgaggactcgacgaataaggcgatgccgaaagtggtg
ggaaggagtaaaatgaccgtttag
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