Culicoides brevitarsis: 134831206
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Entry
134831206 CDS
T10947
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cbri Culicoides brevitarsis
Pathway
cbri03013
Nucleocytoplasmic transport
cbri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134831206
03015 mRNA surveillance pathway
134831206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbri03019
]
134831206
Messenger RNA biogenesis [BR:
cbri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134831206
mRNA cycle factors
P-body specific factors
134831206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Virulence_fact
Motif
Other DBs
NCBI-GeneID:
134831206
NCBI-ProteinID:
XP_063700948
LinkDB
All DBs
Position
1:17247426..17251777
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AA seq
1121 aa
AA seq
DB search
MSSEKTETEEGTSEPQVDDEAELRQYIEEMCAKIKLKEKLRDENTKVNYPPEEFFTKLDS
SLKKNTAFVKKVRQFTASQVDALLNDIAGLNLTKYISEISFALSETKLKLSDIPAAVTLC
TRIHQIYPEFGKSFLENWQKILTIKPGEKVTNPSKMRVDLRFFAELLSCGVFPIKAGLNT
LGSTLVNLIQHDKTEHANLSIIISFCKNCGEEFAGLHPMRMIQLAEKYKIDLPKSTLLPV
EKQTGLQTLLKDYYTSLAKHLKAEHKELQIAERSKRKQIQSKGEISQEKRDQLEALQATY
DKLFTSTQVLSDLLSQPMPELVVEADPTDEGGIINVNDDFSNVHLDPWGDEDTRMFYTDL
PDLRGILPNYSAPKEVSPDQADQEQVTEETLDEDVEPELKFDPSIEVEAEGAASAVTEPD
PPTPEHGKIQIASKQKFEVFLQNLSNCVNKEMADSAAIEFLLNYNIKPYRKKLVRNLFSV
HRTRLDLLPMYGRIMAVINLVAPDAAIDLCQLLKNDFKYQVAKRDQINIESKIKVIRFIG
ELVKFGLYAKLEALMCLKILLYNFQHHQIEMTCAFLEVCGQYLYNCKESRLRTLAALEKM
MRLKTAHALDPRHVAQVENCYFLVKPPDDVGVQVKQRPPMHTYIRHLIFEELNKSNVDMM
IKLMRRLDYTDAELTDYIVKCLTKAYELRYHLIKYLADLLSGLSSYREQVVARVIDNVFE
DVRAGLEIHSPKLAQRRIAMVTYLGEMFNYRLVSASHMVNTLYLIISFGVTMNYEFPSDV
DPPGSMFRLKLACTLLSTCGLYFTKQSHRKMLDYFIVFLQRYYWFKKEDPVFTNNENADL
FPILIEHAYKECLTTIRPKIKFYKNFEEANKAVEKLKRQLYPNIDEQNQETKLEAISEVA
ESGREGENTEELTSEAVDSDDDEFKPREMMEEEYEPEPDEISEQDLQRGHEVTARKDEKT
QEDLEFEQMFEKLAQESYQERLREAAKITPATKDIPVPTTGKQPIKKTYEQLQTAEPEAP
TDSVPFTLMVRGSKAGKQQLKVFQAPIESHLAQNLLKQKEQLREENERVKRLTLNITERI
EEEDYQESLLQRPAQIPQFRNQKYQKFKHQKGVPDADKIFN
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgaaaagacagaaactgaggaaggcacttccgagccacaagttgacgacgag
gccgagctacggcaatacatcgaagaaatgtgcgcgaaaatcaagctgaaagaaaaattg
cgcgacgaaaataccaaagtcaattacccgccagaggagtttttcacgaaactcgattca
agtttgaagaaaaacacggcattcgtgaagaaggttagacaattcactgccagtcaagtg
gatgcgttgctgaacgacattgctggactgaacttgacaaaatacatctcggagatctcg
tttgccttgtccgagacgaaactaaagttgtccgatattcccgcagctgttactttatgc
acgaggattcaccaaatttatccggagtttgggaaaagtttcctcgaaaattggcaaaaa
atattgacgatcaagccgggcgagaaagtaacgaatccgagtaaaatgcgcgtggatttg
agatttttcgcggaattgttgagttgtggcgtcttccccatcaaagctggcttaaatacg
ctcggatcaacgctggtgaatctcattcagcatgacaagacggaacacgcaaatctctcc
atcataatttccttttgcaaaaattgcggcgaagaatttgccggattgcatcccatgcga
atgattcaactcgcggaaaaatacaaaatagatcttccaaaatccacgttgttgccggtg
gaaaagcaaacgggtctccaaacactgctgaaagactattacacgagcttagcgaaacac
ctgaaggcggaacacaaagaactccaaatcgcggaacggagcaaacgaaaacaaatccag
tccaaaggtgaaatttcgcaggaaaaacgtgaccaattggaagctctgcaagcgacttac
gacaaacttttcacctcaacgcaagtcctctccgatttactgagtcaaccgatgccggaa
ctcgtggtcgaagcagatcccaccgacgaaggcggcataattaacgtcaacgatgacttt
agcaacgttcatctcgatccatggggcgacgaggacacgcgaatgttttacacggatctg
cctgatttgcggggaattttgccaaattactcggcgccgaaggaagtttcgcccgatcaa
gcggatcaggaacaagtaacggaagaaacgttagacgaagatgttgaacccgaactgaaa
ttcgatccgagtatcgaagtggaagcggaaggagctgcaagtgctgtgacagagcctgac
ccaccgacgccggaacatggaaagatccaaattgccagtaaacagaaatttgaagtgttt
ttgcaaaacttgtcgaattgcgtgaacaaagaaatggcagatagtgccgcgattgaattt
ttgttgaactataatatcaagccgtacaggaaaaaattggtcagaaatttattttcggtg
catcgaacacgtttagatctccttccgatgtacgggcgaatcatggcagtgataaatctc
gtagcgcccgatgctgccattgacctgtgtcaactcctgaagaacgatttcaagtaccaa
gttgccaaaagggaccaaattaacatcgagtccaagataaaagtgatccgatttattggg
gaactcgtcaaattcggtctttatgcgaagctggaagcactgatgtgtctcaaaattctc
ctttacaacttccaacatcatcaaatcgagatgacgtgcgctttcttggaggtgtgtggc
caatatttgtacaattgcaaggaaagtcgactacggacattggcagctttggaaaaaatg
atgcgtttgaagaccgcacatgctttagatccacgtcacgtcgcacaagtagaaaattgt
tactttttggtgaagcctccggatgatgttggggtgcaagtgaaacagagacctcccatg
cacacctacatccgtcacttgatattcgaggaactgaacaaatcgaacgtcgatatgatg
ataaaactcatgcgaagactcgattacacagatgccgaactaacagactacatcgtcaaa
tgtctcacaaaagcctatgaattgcgatatcacttgataaaatatctcgctgatttgctg
tcgggcttgagttcgtatcgggagcaagttgtggcacgcgttattgataatgtctttgaa
gatgttcgagcgggactggaaattcattcaccgaaattggcacaacggaggatcgcgatg
gtcacgtatttgggagagatgttcaattatcgactcgtgagtgcgtcacacatggtgaat
acgttgtacttgataatttcctttggcgtgacgatgaactacgaatttccgtcggatgtt
gatccgcctggcagtatgttcagactgaagttggcttgtacactcttgagcacgtgtggc
ctgtattttacgaagcaatcgcacagaaaaatgctcgattactttatcgtctttttgcaa
cgttattactggttcaagaaagaagatcccgtcttcacaaacaacgaaaatgctgatctc
ttccccatcttgatcgaacacgcttacaaagaatgtctcacaacaattcgtcccaaaatt
aaattctacaaaaatttcgaagaggcaaacaaagccgtggaaaaactaaaacgccaactt
tatccaaacatcgacgaacaaaatcaagagacaaaactcgaagcgatctccgaagtagct
gaaagtggtcgcgaaggcgaaaacacggaagaactcacctcagaagctgtcgactccgac
gacgacgaattcaaaccgcgcgaaatgatggaagaagaatacgaacccgaacccgacgaa
attagcgaacaagatttgcaacgaggacacgaagtgaccgcacgaaaggacgaaaaaacg
caagaagacctcgaattcgagcaaatgttcgaaaaactcgcgcaagaaagctaccaagaa
cgtttgcgagaagcagcgaaaatcacgccagcgacgaaagatattccagttccgacgacg
ggcaaacaaccgatcaagaaaacgtacgagcagctacaaacagcggaaccagaagctccc
acagactcggtgccgtttactttgatggtgcgtggctcaaaagctggaaagcagcagttg
aaagtattccaggcgccaattgagagtcatctcgcgcaaaatttgttgaaacaaaaggag
cagctgcgagaagaaaatgaacgcgtgaagagattaacgttgaatatcaccgaacggatc
gaagaagaggactatcaagagtcacttttgcaacgacctgcccaaataccgcagttccga
aaccaaaaatatcaaaagtttaagcatcagaagggcgtcccagatgccgataaaattttc
aattga
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