Culicoides brevitarsis: 134831288
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Entry
134831288 CDS
T10947
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cbri Culicoides brevitarsis
Pathway
cbri03020
RNA polymerase
cbri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134831288
09124 Replication and repair
03420 Nucleotide excision repair
134831288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbri03021
]
134831288
03400 DNA repair and recombination proteins [BR:
cbri03400
]
134831288
Enzymes [BR:
cbri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134831288
Transcription machinery [BR:
cbri03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
134831288
DNA repair and recombination proteins [BR:
cbri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
134831288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
134831288
NCBI-ProteinID:
XP_063701054
LinkDB
All DBs
Position
2:complement(32209287..32217172)
Genome browser
AA seq
1880 aa
AA seq
DB search
MSTNDSKAPLRLVKRVQFGILSPDEIRRMSVTEGGIQYPETMEGGRPKIGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLVKPVFHIGFITKTIKILRCVCYYCSKMLVSPSNPK
IKEVVMKSKGQPRKRLTYVYDLCKGKKICEGGEDMDMTKDGQPVDANKKPGHGGCGHYQP
SIKRSGLDLMAEWKNVNEDSQEKKIVITAQRVWEIFKNITDEECYIMGMDPKYARPDWMI
ITVMPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELKKNESSGAAAHVIAENIKM
LQFHVATFTDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSVAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIIRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFIEKEQMMNLLMFLPTWDGKIPQPCILKPKPLWTGKQVFTLIIPGNVNMIRTHSTH
PDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFY
GNIQTVINTWLLLEGHSIGIGDTIADPQTYQEIQRAIKKAKEDVIGVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEGVEFQSMPTI
KLSNKAFEKRFKFDPSNERYLRRVFNEDVIKELTESSQVIQELENEWEQLCRDREALRQI
FPNGENKVVLPCNLQRMIWNVQKIFHINKRGATDLNPLKVIQGVKDLLSKCVIVAGSDRL
SKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNDDSKF
QDNEEENVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEF
KAIGEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEV
DPMRGVSENIILGQLPKMGTGCFDLLLDAEKCKSGMEIPHSSIMGGTGMFFGSAATPSMS
PEMTPWGPANTPGYGEWSPAGTASGMTPGGPGFSPSAASDISGMSPSWSPAHGSPSSPGP
SMSPYASSPSQSPSYSPSSPGYQGASPSGSGVSPSYSPSSPRYSPTSPIYSPTSPHYSPT
SPGYQPQSSTYSPTSPSYSPTSPAYPSMPYNSSSPAYSPTAPFSPSSPYSPTSPSYSPTS
PAYSPTSPSYSPTSPSYSPSSPSYSPTSPSYSPSSPSYTPGTPSYSPTSPNYSPTSPNYS
PTSPSYSPSSPKYSPTSPSYSPTSPSFAGGSPQYTPNSPAYSPTSPSYSPTSPSYSPSSP
THISPGTHQYSPSSPSYSPTTQTSYSPNMSYSPGSQRQYSPTSPTEYSPSSPAYSPATTR
YSPTSPSYSPSSPAYEENDN
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaaacgactcaaaagcgccattacggctcgtaaaacgagttcaattcggtatt
ttgtcgcctgatgaaatccgtcgaatgagtgtcacggaaggcggaattcagtatccggag
acgatggaaggcggcaggcccaaaattggaggtcttatggatccgcggcagggagttatc
gatcggaatagtcgttgtcaaacgtgcgccggtaatatgacagaatgtcccgggcatttt
gggcacattgatctcgtgaagcccgtttttcacatcggtttcatcacgaaaacgattaaa
attttgcgttgcgtgtgttattactgctcaaaaatgctcgtttcgccatcgaatccgaag
atcaaagaggttgtcatgaaatccaagggtcaaccacgcaaacgcctgacttatgtgtac
gacttgtgcaagggcaagaagatttgcgaaggcggcgaagacatggatatgacgaaagat
gggcaaccagtggatgccaataagaaaccgggtcacggaggatgcgggcattatcaacct
tcgatcaaacgaagcggtttagacttgatggctgaatggaaaaatgtcaacgaggactcg
caagagaagaaaatcgtgataacagctcaacgtgtttgggaaattttcaaaaatatcacc
gatgaggaatgttacatcatgggcatggatccgaaatatgctcgtcccgattggatgatc
atcacagtaatgcccgtgcctccgttatctgttcgtcctgcagttgtcatgttcggcgct
gcgaaaaatcaagacgatttgacacacaaactcgctgatattatcaaagcgaacaacgaa
ttgaagaaaaatgagtcttcaggggcagcagctcacgtaattgctgaaaatataaaaatg
ttacaatttcatgtggcgacttttaccgataatgacatgcctggattgcctcgagccatg
caaaaatccggaaaacccttaaaagctgtaaaagctcgtttgaagggcaaagaaggtcgt
attcgaggcaacttgatgggaaaacgtgtcgacttttcagctcgaactgtcatcacaccc
gatccaaatttgcgaattgatcaagttggagtccctcgaagtgttgcccaaaacttgacg
ttccccgaactcgtaacgcccttcaacattgatcgcatgcaggaacttgttcgtcgtgga
aactctcaatatccgggcgccaaatacatcattcgtgacaatggggaacgtatcgatttg
cgtttccatccaaaaccgagcgatttgcacttgcaatgtggttacaaagtcgagagacat
ttgcgcgacgacgacttggtcattttcaatcgtcaaccaacactgcacaaaatgagtatg
atgggtcatcgtgtcaaagtactcccttggtcgacattccggatgaacttgtcgtgcact
tcgccctacaacgctgattttgatggcgacgaaatgaacttgcatgtgccgcaatccatg
gaaacgagagcagaagtcgaaaatattcacattacgccgaggcaaattatcacgccgcaa
gccaataagcctgttatgggtattgtgcaagatacgttgacagctgtaaggaaaatgaca
aaacgtgatgtgttcattgagaaagaacaaatgatgaatttgctgatgttcttgccgact
tgggatggaaaaattccgcaaccgtgtattttgaagccgaaacccttgtggactggcaag
caagtgttcacgttgattattccgggtaatgtaaatatgataagaacgcattcgacgcat
cctgatgaggaagatgatgggccttataagtggatttcgccgggagataccaaagttatg
gtcgaacatggtgaacttgtcatgggaattttgtgtaaaaagacacttggtacctctgct
ggctcattgcttcacatcgtcttcctcgaattgggacacgagatcgcaggtcgcttctac
ggcaacatccaaactgtcatcaacacgtggttgctgctcgagggtcacagcatcggtatc
ggcgacacaattgccgatccccaaacgtaccaagaaatccagcgcgccatcaaaaaagcc
aaagaggatgtcatcggtgtcattcaaaaagctcacaacatggaactcgaaccgacgccc
ggcaacacgttgcgtcaaacgttcgaaaatcaagtaaatcgcatccttaacgacgctcgt
gacaaaaccggaggctccgccaagaaatctctcacggaatacaacaacttaaaagctatg
gtcgttgctggttcaaagggttccaacatcaacatctctcaagttattgcttgtgtgggt
caacaaaacgtcgaaggtaagcgaatccccttcggtttccgcaaacgaacgttgccgcac
ttcatcaaagacgattacggtcccgagtcacgtggtttcgtcgaaaattcctatcttgct
ggcttgacaccgaccgaattttactttcacgctatgggaggtcgtgaaggtttgattgat
actgctgtcaaaactgccgaaactggatacattcaacgtcgtttgatcaaagctatggag
tctgtcatggtaaattacgacggaactgtcagaaattcagtggggcaactcattcagttg
cgttacggcgaagacggattgtgcggcgaaggcgtagagttccaaagtatgccgacaatc
aaactcagcaataaggcttttgagaaaagattcaaatttgacccatctaacgagagatat
ttacgtcgggtgttcaatgaagacgttataaaagaacttaccgagtcaagtcaagtaatt
caagagctggagaacgaatgggagcaactttgtcgcgatcgtgaagctttgagacaaatt
ttcccgaatggcgagaacaaagtcgtccttccctgcaatttacaacgcatgatttggaat
gtacagaaaattttccacatcaataaacgaggcgccacagatttgaaccctctcaaggtc
atccaaggtgtcaaagatttgctctccaaatgtgtaattgtcgctggaagcgatcgttta
agcaaacaagcgaacgaaaacgctactttgctcttccaatgtctcgtcagatcgacttta
tgcacaaaatatgtcgccgaagagttccgcttgaacaacgaagccttcgaatggttgatc
ggtgagatcgagacacgtttccaacaagctcaagccaaccctggggagatggtaggcgct
ttggcagcccaaagtttgggtgaacccgctactcagatgacactgaacactttccatttc
gccggtgtctcctcgaagaacgtaacgctcggtgtgccgcgtctaaaggaaattatcaac
atctcaaagaagccaaaagctccctccctaacggtatttttaaccggaggagctgctcgt
gacgccgaaaaagctaaaaacgtcttgtgtcgtcttgaacacacaacgttgcgaaaagtc
acagcaaatacggcaatttattacgaccccgatccacaacgtaccgtaattgccgaagat
caggaattcgtaaacgtttattatgaaatgccagatttcgatccgacacgaatttcgccg
tggttgctgcgtattgagctggatcgcaaacggatgaccgataaaaaattgacgatggaa
caaattgcggaaaaaattaacgctgggttcggtgacgatttgaattgtattttcaatgat
gacaatgccgacaaacttgtgttgcgaattcggatcatgaacaacgacgattccaaattt
caggacaatgaagaggaaaatgtcgataaaatggaggatgatatgttcttgcggtgcatt
gaagcgaatatgttatcagatatgacattgcaaggtattgaggcgattggcaaggtatac
atgcatttgccacaaacggacagcaagaaacgtattgttatcacggaaacaggcgaattt
aaggctattggtgaatggttgctcgaaactgatggaacgtcgatgatgaaagtcctcagt
gagcgtgacgtggatcccgtacgtacttttagtaacgatatttgtgaaattttccaagta
cttggcattgaagctgtgcgaaaatctgtcgaaaaggaaatgaacgctgttttgcagttc
tacggtttgtacgtaaactatcgtcatcttgccctgttgtgtgacgtaatgacagcaaaa
ggacatttaatggctattacgcgtcacggcatcaatcgacaagatacgggcgccttgatg
agatgctccttcgaagaaacagtcgatgtgttgatggatgccgctgcacatgccgaagtc
gatccaatgcgtggcgtttctgagaacattattcttgggcaacttccgaaaatgggcacg
ggatgcttcgatttgcttcttgacgccgaaaaatgtaaaagtggcatggaaattccgcat
agttcaattatgggaggcacaggaatgttctttggaagtgccgcaacgccaagtatgagt
cccgaaatgacgccatggggacctgcaaacacccctggatatggagaatggtctcctgcg
ggcacagcaagcggtatgacacccggcggacccggtttttcgccaagtgcagcgtcagat
atttcgggtatgtcaccttcgtggtcccccgcacatggatctccatcatctccgggacct
tcaatgtctccgtatgcctcgtcaccgagtcaatctccttcttattcgccttcaagtccc
ggatatcaaggagcttcaccaagcggaagtggcgtatcgccgagttattcaccaagtagc
ccgcgttacagcccaacaagcccgatttacagtccgacaagcccgcattatagcccgacg
tcgcccggatatcaaccacaatcgtcgacatactcgccaacgagcccgagttattcgccg
acatcgccggcatatccatcgatgccctataatagctcaagtcccgcatattcgccgaca
gcgccgtttagcccgtcgagtccttattcaccgacatcgccttcttacagtccaacatcg
ccggcatactctccaacgtcgcctagttactcgccaacgtcaccgagttattcaccttcg
agcccgagttacagcccgacaagcccttcgtacagtccttcgtcgccctcatatacgccg
ggaacgccgagttacagtccaacatcccccaattacagccctacaagtcccaattacagc
ccgacatcgccgagttactcgccgtcgtccccgaaatactctccaacgagcccgagttac
agtccaacttctccgtcattcgctggaggaagtcctcaatacacgccaaacagtcctgcg
tattctccaacttcaccaagttattcgccaacttctccaagttactctccatcgagtcct
acgcatattagtcccggaactcatcaatattctccatcgtcaccaagttacagtccaacg
actcaaacaagttacagcccgaatatgagctattctccgggatcacagcgacaatatagc
ccgacatctccgacggaatactctccaagctcgccagcttattctccggcaacgacgaga
tattctccaacgagtccgagttacagtcctagcagccctgcgtatgaagaaaacgacaat
taa
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integrated database retrieval system
