Culicoides brevitarsis: 134832365
Help
Entry
134832365 CDS
T10947
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cbri Culicoides brevitarsis
Pathway
cbri03013
Nucleocytoplasmic transport
cbri03015
mRNA surveillance pathway
cbri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134832365
09122 Translation
03013 Nucleocytoplasmic transport
134832365
03015 mRNA surveillance pathway
134832365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbri03019
]
134832365
03041 Spliceosome [BR:
cbri03041
]
134832365
Enzymes [BR:
cbri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134832365
Messenger RNA biogenesis [BR:
cbri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134832365
Spliceosome [BR:
cbri03041
]
Complex C
Other components
EJC/TREX
134832365
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134832365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Thioredoxin_6
DUF2321
Motif
Other DBs
NCBI-GeneID:
134832365
NCBI-ProteinID:
XP_063702429
LinkDB
All DBs
Position
2:13075365..13078791
Genome browser
AA seq
423 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQAVAESTDQPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCG
FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENHTYVLVMCHTRE
LAFQISKEYERFSKYMPNIKVGVFFGGMPIQKDEEQLKATTPHIVVGTPGRVLALIKNKK
LNLKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHSKQVMMFSATLSKEIRPVCKKFMQ
DPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALA
QLLTEQNFPAIGIHRGMLQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDM
PEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKVLNEVQDRFDVNITELPDEIDLSSYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgacgatcttttagactatgaagacgaggaacagacggaacaagccgtt
gctgagtccacagatcagcccaagaaggatgttaagggtacctatgtctccattcacagc
tccggttttcgtgatttcttgttgaaaccggaaattttgcgggcgatcgtcgattgtggg
ttcgagcatccgtcagaagtgcaacacgagtgcattccgcaagccgtccttggcatggat
attctgtgtcaagcgaaatccggtatgggaaagactgcggtctttgtgttggcgacgctg
caacaactggagcccacggagaatcacacgtatgtgctcgtcatgtgtcacacgcgtgaa
ttagcattccaaatcagcaaggagtacgaacgtttctccaaatacatgcccaacatcaag
gttggcgtctttttcggcggcatgcccatccaaaaggacgaggaacagttgaaagctacc
acgccgcatatcgttgtcggaacaccgggtcgcgtcttggcactcatcaagaacaagaaa
ctcaatttgaaacatttgaagcactttatcttggacgagtgcgacaaaatgcttgaacaa
ttagatatgcgtcgcgacgttcaagaaattttccgcaatacaccacacagcaagcaagtt
atgatgttctccgctactttaagcaaggaaattcgtccggtttgcaagaaattcatgcaa
gatcccatggaggtgtacgttgacgacgaaaccaagttgacattgcacggcttgcaacaa
cattacgtcaagttgaaggaaaatgagaaaaataaaaaattatttgaacttttggatgtc
ttggagttcaatcaggtcgtaattttcgtgaaatcagtgcaacgttgcatggcactcgcg
caactcttgacggaacaaaatttccccgcgatcggcattcatcgtggcatgttgcaggag
gagcgtttgagtcgttaccagcaatttaaggatttccaaaagcgtattttggtggcgaca
aatttgtttgggcgcggcatggatatcgagcgtgtcaatattgtgttcaactacgacatg
cccgaggactcggatacgtatttgcatcgggtagcgcgtgccgggcgtttcggtaccaaa
ggtttggccattaccttcgtgtcggacgagggcgacgcaaaagtattgaacgaggtgcag
gatcgatttgacgtcaatatcacagaattacccgacgaaattgatttgtcgtcatacatc
gagggacgataa
DBGET
integrated database retrieval system
