Culicoides brevitarsis: 134832822
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Entry
134832822 CDS
T10947
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cbri
Culicoides brevitarsis
Pathway
cbri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134832822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbri03041
]
134832822
Enzymes [BR:
cbri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134832822
Spliceosome [BR:
cbri03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
134832822
Complex B
134832822
Complex C
U2 SnRNP specific factors
134832822
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
134832822
NCBI-ProteinID:
XP_063703074
LinkDB
All DBs
Position
1:12468988..12471664
Genome browser
AA seq
790 aa
AA seq
DB search
MGDDRFGPGKNISFGGFSFKKATNSSNNQKSYSMNAVPPPSFLTDSRSKPTPKVPVGTPG
FSKQGYSTMDSIAQFANSSHYSVGSSKKRGLDEDSYFDDDDAQETPDLPYQPAPDSPSAV
QKKDDSDESEDELDAFMSMINKQVAKDETKSKTVEKVEVSASNTKKGASNSKGTRADIDD
EDDEESYYRYMEENPLAGVLDQGSDDEMEYDEDGNPIAPPRKRDIDPLPPVDHSEIDYQP
FEKNFYTPHEDIANLTPQQVNDLRKTLGIKVTGPLPPHPVSSFGHFGFDDTLIKAIRKSE
FTQPTAIQAQAIPAALNGRDIIGIAKTGSGKTAAFLWPMLVHIMDQKELQPGDGPIGLIL
APTRELSLQIYNEAKKFGKIYNIHVVCCYGGGSKWEQSKDLEKCPEIIVATPGRMIDMVK
MKATNLRRVTYLVLDEADKMFNMGFETQVRSICDHVRPDRQCLMFSATFKKKIEKLARDV
LTDPVKIVQGDIGEANEDVTQHVLIFNDPQRKWNWLLNKLVEFLSDGTVLIFVTKKAECE
QVANSLMVQEYNVVLLHGDMEQAERNKVITKFKKREAEIMVATDVAARGLDIPHIRTVIN
YDIARDIDTHTHRVGRTGRAGEKGTAYTLVSDKDKEFVGHLVRNLEGANQEVPDDLMKLA
MQSSWFRKSRFKTGKGKSLNVGGAGLGFRARVVPQNSDNQPAAGVPYQKSSSAGGNPTMS
RLQAMKEAFKSQYNSQFKVSSDRSWEQVQEGPTFAPPSLPPPPPTSSNKHSASTESDTGS
AKKARKSRWD
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgatcgttttggacccggaaagaacatcagcttcggcggattctccttcaaa
aaggcgacaaattcctcaaacaaccaaaaaagttattccatgaatgccgttcctccgccg
tcatttttgacggattctcgttcaaaaccgacgccaaaagtgcccgttggtacgccaggc
ttctccaaacaaggatattcgacgatggattccatcgctcagttcgccaattcgagccat
tattccgtagggagctccaaaaagcgtggtttagacgaagacagctactttgacgatgat
gacgcacaagaaacgcccgatttaccgtatcaaccagcgccagattcgccgtcagctgtt
caaaagaaggacgacagcgacgaaagcgaagacgaactcgatgcttttatgtcgatgatc
aacaaacaagtggcaaaggacgagacaaagtcaaaaactgtcgaaaaagttgaagtttca
gcgtcaaacacgaaaaagggagcttccaatagcaaaggaacacgtgccgacatcgacgac
gaagacgatgaagagagttattatcgttacatggaagaaaatccccttgctggcgttttg
gatcaaggatctgacgacgaaatggagtacgatgaagatggaaatccaattgctccgccg
cgaaaacgcgatattgatcctttaccgcctgtggatcactcggaaatcgattatcagcca
tttgagaagaatttttacacgcctcacgaggatattgccaacttgacgccgcaacaagtc
aatgatttgcgaaaaactttagggattaaagtaactggaccgcttcctccgcatcccgtt
tcgagttttgggcattttggcttcgacgataccctcataaaagccatccgaaagagcgaa
tttacacaaccgacagcaattcaagcacaagcgatccccgcagcgcttaatggacgcgat
ataattggaattgcaaagaccggaagtggtaaaaccgccgcttttctatggcccatgctc
gttcatatcatggatcaaaaggaattgcaaccaggcgacgggccaattgggctaattctt
gctccgacacgcgaattatcgctccaaatctacaacgaagcgaagaaattcggcaaaatt
tataatattcacgtcgtttgctgctacgggggaggcagtaaatgggaacaaagcaaagat
ctcgagaaatgcccggaaattatcgttgccacgccgggtcgaatgatcgatatggtcaag
atgaaagcgacaaatttgcggcgtgtcacatatttagtgctcgatgaagccgacaagatg
ttcaatatgggtttcgagacacaagttcgttcaatttgcgatcatgtgcgacccgacaga
caatgtttgatgtttagtgcgacttttaagaagaaaattgagaaattagcccgtgatgtc
ttgacagatcccgtgaaaatcgttcaaggtgacatcggggaagcgaacgaggatgttacg
caacacgtcttgatcttcaacgatccgcaacgaaaatggaattggctcctaaataaactc
gtggaattcctctcagacggcaccgtgttgatttttgtcacaaaaaaggcggaatgcgaa
caagttgccaacagtttgatggtccaagagtacaacgtcgttttactacatggcgatatg
gaacaagcggaacgcaacaaagtcatcacgaaattcaagaaacgcgaagctgagattatg
gtagcgactgacgtagcagcgcgtggtttggatattccccatattcgaacggtaatcaac
tacgacattgctcgcgatattgacacgcatactcatcgtgttggaagaacaggtcgagca
ggcgaaaaaggcactgcttacactctcgtcagtgacaaagacaaagaattcgtgggacat
ctcgtgcgaaatctcgaaggagcgaatcaggaagtgcccgacgacttgatgaaactcgcg
atgcagagttcgtggttcagaaaatctcgttttaagacgggcaagggtaaaagtttgaat
gtcggaggcgctggattgggcttcagagcacgagttgttcctcaaaacagtgacaatcaa
ccggcagcgggagttccgtatcagaaaagcagttcagcaggtggaaatccgacaatgagt
cgtttgcaagcgatgaaggaagcgttcaagtcgcagtataactcgcagtttaaagtgagc
agtgacagatcgtgggaacaagtacaagaaggaccgacttttgcgccgccatcgttgcct
ccgcctcctccaacttcttccaataaacattcggcatcgacagaaagtgacacgggatct
gccaaaaaagcgagaaagagtcgatgggattaa
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