Culicoides brevitarsis: 134832837
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Entry
134832837 CDS
T10947
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cbri Culicoides brevitarsis
Pathway
cbri03013
Nucleocytoplasmic transport
cbri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134832837
03015 mRNA surveillance pathway
134832837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbri03019
]
134832837
Enzymes [BR:
cbri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134832837
5.6.2.5 RNA 5'-3' helicase
134832837
Messenger RNA biogenesis [BR:
cbri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134832837
mRNA cycle factors
Common to processing body (P body) and stress granule
134832837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
AAA_22
SRP54
GldH_lipo
AAA
AAA_5
AAA_16
Motif
Other DBs
NCBI-GeneID:
134832837
NCBI-ProteinID:
XP_063703099
LinkDB
All DBs
Position
1:23972400..23977016
Genome browser
AA seq
1099 aa
AA seq
DB search
MSVDAFNSQSLTFIEENDLIGADTQGTDFDFRDFTLPQQSQTQDNNSEINGFENTEIEKK
ILTGINELKFEEDEDEEVVTSNQDLPEHSCKYCGIHDPSCVVMCNICKRWFCNGRGNTSG
SHIVNHLVRAKHKEVTLHSDGPLGETVLECYSCGVRNVFVLGFIPAKADSVVVLLCRQPC
SSLSSLKDMNWDPEQWKPLITDRCFLAWLVKSPTEQDQMRARLITAQQINTLEELWKENE
EASFEDLEKPGIDKEPAQVQLRYDDGYQYQNIFGPLVNLEAEYNKRLKESQTQDNVEVRW
DVGLNRKSIAFFTLAKVDSDMKLMHGDELRLRYVGEMGKNWSGVGHVIKLPDNCNDDVGL
ELKNSQQPPTEYTSNFMVDFIWKGTSFSRMQLALKKFAVDENSVSNYIYSRLLGHGRHDG
SDDVTFRVSNLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSASIVYQ
LVKINGGPVLVCAPSNTAVDQLTEKIHRTNLRVVRVCAKSREAIDSPVGFLALHNQIRNM
GSNSELKKLQQLKEETGELSSSDENRYRMLKRQAERELLEAADVICCTCVGAGDARLSKI
KFNSILIDESMQSTEPECMVPVVLGARQLILVGDHCQLGPVVVCKKAAKAGLSQSLFERL
VVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEERKLKIDFPWPNIDCPMFFL
VTLGAEEIAGSGTSYLNRTEAANVEKITTKFLKAGVKPEQIGIITPYEGQRAYLVQYMQY
QGALHSKLYQDIEIASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLNVALTRSKYG
IIIVGNPKVLSKQQLWNNLLHFYKDKKVLVEGSLNNLKESVIQFQKPKKIINTFNPGSHF
MTKNTYDAKEVMTTGSVYDRPKQMSYIQANQPSTSLSFQQQFNYSTNSSNNMFATHHDRM
SYISSECSQSLSNNMAVPVGMFMNMANIPPRFYNQQQQAIQAAKQSRKKFQTHSNDNKSF
ISDSQRLKLAPIGSGGPYTQALSQNMSQPGFSLSQQPDFSQDLLSELQSQGEIPLSQHDF
NSQNPGFGLPSAPNYSQPF
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcatttaattcacaatcattaacgttcatagaagaaaatgatttgatt
ggtgctgatacccaaggtactgactttgattttcgggactttactctaccacagcaaagt
caaactcaagataacaacagtgagataaatgggtttgaaaatactgaaattgaaaagaaa
atcctaacaggcattaatgagttgaaatttgaagaagacgaagatgaagaagtagttact
tcaaatcaagatttaccagaacattcgtgcaagtactgtggaattcatgatccaagttgt
gtggtcatgtgtaatatatgtaaaagatggttttgtaatggaagaggcaacacttcgggc
tcgcatattgtcaaccaccttgttagggcaaaacataaagaagttacactccatagtgat
ggacctttgggcgagactgtccttgaatgttattcatgcggagtcaggaatgttttcgtg
ctcggttttataccagcaaaagcagattccgtagtcgttttactatgcagacaaccatgt
tcgtcactaagttctctaaaagatatgaactgggatcctgaacaatggaaaccacttata
accgatagatgttttctcgcttggcttgtaaaatcacctacagagcaggaccaaatgcga
gcacgtttgatcacggctcaacaaatcaatacacttgaagaattatggaaagagaatgag
gaagcctcatttgaagatttagagaaaccaggcatcgataaagaaccagctcaagtgcaa
ttacggtacgatgatggatatcaatatcaaaatatttttggaccgttggtcaacttggaa
gcggaatacaataaacgtttaaaagagtcccaaacgcaagataacgtcgaggttcgatgg
gatgttggtcttaatagaaagagtattgcatttttcactttagcaaaagtagatagtgat
atgaagctaatgcatggggatgagttgcgccttcgttatgttggtgaaatgggaaaaaat
tggtcaggtgttggacatgtcattaaacttccagacaactgtaatgatgatgttggatta
gagttaaaaaacagccagcagcctccaacagaatatacttctaatttcatggtagatttt
atatggaagggaacatcttttagtcgtatgcaactagctttgaaaaaatttgctgtagac
gagaattcagtatcaaattatatttattcacgtcttcttggacatgggcgccatgacgga
tcagacgacgttacttttcgagttagtaatcttccaaaacactttagtgctccaaatttg
cctgatttgaaccggtcgcaagtttatgcagtcaagcatgctattcaacgtccattaagt
ttaattcaaggccctccaggaactggtaaaacagttacctcagcaagcattgtttatcaa
ttagttaaaattaatggcggacctgtgcttgtttgtgcacctagtaacacagcggttgat
caacttactgagaagattcatcgtactaatttacgtgtcgtgcgtgtttgtgcaaaatca
agagaggccattgattcgcctgttggatttttagctttacacaatcaaatacgcaacatg
ggatcgaattcagagttgaaaaagcttcagcagttgaaagaagagacaggagagttaagt
tcatccgatgaaaatcgctatcgtatgttaaaacgacaggctgagcgtgagctattggaa
gcagctgatgttatttgctgtacatgtgtaggtgctggcgatgctcgactttctaagatc
aagtttaactccatcttaattgatgaaagcatgcaatccacagaaccagaatgtatggta
cctgttgttttgggagcacgtcaacttattcttgttggcgaccattgtcaattaggtccg
gtggttgtttgtaaaaaagctgcaaaagctggcctctctcaaagtctttttgagcgtttg
gtagtgttaggtattcgaccatttcgattagaagttcagtatcgtatgcatcctgagctt
tctcaatttccatctaattttttctatgaaggaagccttcaaaatggagtgtgtgcggaa
gaacgcaaattaaaaattgattttccatggcctaatattgattgtcccatgttttttctc
gtaacattgggagccgaagagattgctggttcaggcacatcttatcttaaccgaactgaa
gcagcaaacgtagaaaaaattacaactaaatttttaaaagctggtgttaaaccagaacaa
ataggcattattactccttacgaagggcagcgtgcttacttagttcaatacatgcaatac
caaggtgcgcttcactctaagctatatcaagatatagaaatagctagcgtggatgcattt
cagggaagggaaaaagatttaatcataatgtcgtgtgttcgttcaaacgaacaccaagga
atcggatttttgaatgatccacgtagattaaacgttgcgttaacaagatctaaatatgga
ataattatcgttggaaatccaaaagttctatcaaaacaacaactatggaataatttatta
cacttttacaaagacaaaaaagttctggtcgaaggatctttgaataatttaaaagaatca
gtgattcagtttcaaaagccgaaaaaaataattaacacattcaatcctggttcacatttc
atgaccaaaaatacttatgacgctaaagaagttatgactacagggtctgtatatgatcgt
ccgaaacaaatgagttacattcaagctaatcaaccatcaacttcgcttagttttcaacaa
caattcaactactcaacaaactcgtcaaataatatgttcgcaactcatcatgatcgaatg
agctacatttcatcagaatgttcacaatcactttctaataatatggcagttccagtagga
atgtttatgaatatggcgaatattcctcctcgtttctataaccaacaacagcaagccata
caagcagcaaaacaaagtcgtaaaaagtttcaaacgcattctaatgacaacaaatcgttc
atatctgatagtcaaagattgaaattagcaccaattggtagtggaggaccgtatacacaa
gctctttcacaaaacatgagccagcctggttttagtttgagtcaacaaccagacttttca
caagatttattaagcgaacttcagtcacaaggagaaattccattatcacaacatgatttc
aatagtcaaaatcctggatttggtctaccatcagctccaaattattcgcagcctttttga
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