Culicoides brevitarsis: 134834463
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Entry
134834463 CDS
T10947
Name
(RefSeq) endoribonuclease Dcr-1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cbri Culicoides brevitarsis
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cbri03036
]
134834463
Chromosome and associated proteins [BR:
cbri03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
134834463
microRNA pathway
RISC loading complex
134834463
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Ribonuclease_3
Dicer_dsRBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
Dicer_PBD
DEAD
dsrm
ResIII
Motif
Other DBs
NCBI-GeneID:
134834463
NCBI-ProteinID:
XP_063705227
LinkDB
All DBs
Position
3:complement(30567415..30579496)
Genome browser
AA seq
2186 aa
AA seq
DB search
MAYFWTDNVHTTAFTPRDYQIELLAASREQNIILCLNQFTEFIAFQLIQEISHELRRKSD
NGKHKLVIYLTSNSYAFGLIENLSDLKVFQIHDEPETAEETPEIDFEAIFAENHVIFMSI
EKLIDVLVCGFLDLEDVRLLIVDECHKIYGKSQVHELFNEFYTNARQKPSILGLAGALHS
ADCAPGRLGAEIDWLEKLMRCRAESASDVVTVLRYCQKPTEILLQCAPPEMNEMTECIRN
MILCQKSFLMDHRFDPSEIYSDEEYLEELKAIPDPKIQPLEFLDKFLFILDELGPWCADR
ASFTFLIQLEKQKIKAKFERHYLLLCLVSTTFIQVRSYCQLVFEQISERKSQVELYSTPK
VLRLLEILRCFNPEANKKTEKLPEIKVGDKENVESPYKDIHIDHLCHAIDHVGRLIDNIS
KDLTSLKSKVNDLQSPEAAPKVPQAPATSQNSPVRTVTRARRKAGLGPRTNQRHNAYQND
PDSLCGIIFCDSKHIAKALFSLFCEMSKHDPELTYLNVQYTIDKTADPVLEPKEAETEHR
KQEDVLKRFRMHDCNLLIGTSVLEEGIELPKCNLVVRWDPPKTYRSYVQCKGRARAAQAY
HIILVAPKIYANSDENSLPEAINPKNHKLICHAGEADESLYVKIDEKIEELTENEPKIDE
SESKVEEITENSEEKDPEEPKSLELPTECLHKNFIPAIDEAKKSRGLSLMHSATEEMIEK
LAEYIEIEKMLLRKCMNTEPSQREFENSEKYLKCVAAYKPPDAETEVFVDLSNAIALVNK
YCAKLPSDTFTKLTPLWRCCRLTRGESTLYQYTIRLPINSPLKYDITGPPMPNRVLARKV
CALTACKTLHESGELDNNLQPIGKEGFKAFESDWENFELEQEDEAIVNENTEPRPGTTKR
RQYYYKRIASAFSDCRPTVGTKTYFYFINMTLTCPIPEEQNTRGRKVYPPEDSPQGFGIL
TTKRIPKVSAFPIFTRSGEVRVSLQLISTDIILNENQLKIVNMFINYTFTNVLRLQKYLM
LFDPEATENCFFIVPTITAKNDKSIHVDWEFLEMIAENINMTPQFVSDEIRKAQSFDANM
FKDAVVMPWYRNQDQPQYFYVAEICYHLSPNSSFPGDNYSTFKEYYFKKYGIEIQNQKQP
LLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTIHPFPAS
LWRAAVCLPCILYRFNALLLADEIRKQVSRDIGLGCQDIEEEDFEWPMLDFGWCLADVLK
KSREAKLQAQKLVNGEEKEEIVENSEIKTPEKEEKLENDEEKKENGEDEEPSANELLEEA
TKKANNELEIGTWSNEMAKNIKNDLEDFDDELDGWGLPSNVSMCTRKNTQIRYGSPTSWE
PMGSKMNHNPQNPMGDLYYSDSEMSFRSDDDSDFDNSDDEAENGGLKIEFKSDNVAEAIE
SEKDILKRQRQLDIIKTINKGQELPQAQFEGFNCMEAFDNDESMQMVERKIKWHETEFER
CKEESKTEILSSKMLVKSHEKLIIKRKSGKSDAITPENEENVNLMDLVPYMEEREVAEIL
GCSLEQVQKLTIDQLFALNEAYLARVTLEKAEIVGVGDIFDRFNDRALYDGQKMLVIRYP
DVRCRPISEDLTKVDFHKTDEIYRELEKTGNFSFDYQPDLETHPGPSPSIILQALTMSNA
NDGINLERLETIGDSFLKYAITTYLYLTYENVHEGKLSHLRSKQVSNLNLYRLGRRKILG
ESMIATKFEPHDNWLPPCYYVPKELEQALIAAKIPACHWNLADLPNIKQLPSEEICRLVK
ERAEEMGLLDDDDESDESLPPDEEENVDPEDFPCFIPYNLVTQHSIPDKSIADCVEALIG
AYLIECGPKGALLFMAWLGIRVLPMRKSLENVKKTRKFEEMYDDWKIPRSPLLHFSPHVD
ESLDCLLDGYEKFEEAIGYKFRDRSYLLQAMTHASFSPNRLTDCYQRLEFLGDAVLDYLI
TRHLYEDPRQHSPGALTDLRSALVNNSIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQ
NENGHCISEEFYLLSEDECDEAEDVEVPKALGDVFESVAGAIFLDSFMSLDSVWKVYSSM
MNPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTYRGIGRN
YRIAKCTAAKCALRQLKKQGLINRKH
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atggcttacttctggaccgacaatgtccataccacagcgttcactccccgcgactaccaa
attgagcttctggcggcgtcgcgcgaacaaaacatcattttatgcctgaaccagttcacg
gaattcatcgcttttcagttgattcaggaaatttcgcacgaattacgccgcaaaagcgac
aatggcaagcacaaactcgtcatttatctcacaagcaactcctatgccttcggattgatc
gaaaatttgtccgacctaaaagtttttcaaatccatgacgaaccggaaacggcagaggaa
acacccgaaatcgattttgaagcaattttcgcggaaaatcacgtcatttttatgagtatc
gagaagctaattgacgttttggtctgcggatttttggatttggaagacgtgcgactcttg
attgtcgacgaatgtcacaaaatttacggaaaatcgcaagttcatgagttgttcaatgaa
ttttatacgaatgcgaggcagaaaccgagcattttgggcttggcgggagcgttacatagt
gcagattgcgcgcctggaagattgggagctgaaattgattggttggaaaaactcatgaga
tgtcgtgcggaatcggccagtgatgttgtgacagtgttgcgatattgtcagaagccaacg
gagattttgctgcaatgtgcaccgccggaaatgaatgaaatgacggagtgcataaggaat
atgattttgtgccaaaagagctttttaatggatcacaggtttgatccttcagaaatctac
agcgacgaagaatatttggaagaactcaaggcaattcctgacccgaaaatccaacctttg
gaattcctcgacaaatttctcttcatccttgacgaactcgggccatggtgtgctgatcgc
gcttcattcactttcctcatccaactcgaaaaacaaaagatcaaagctaaattcgaacgt
cactacctcctcctatgtcttgtatccacgacttttattcaggtccgcagttactgccaa
ctcgtcttcgaacaaatttccgaaagaaaatcgcaagttgagctctattcaactccaaaa
gtcctgcgattgctcgaaattttgcgatgtttcaaccccgaagcgaataaaaaaaccgaa
aaattgccggaaatcaaagttggagacaaggaaaatgtggagtcgccatacaaagacatc
catatcgatcacttgtgtcacgccattgaccacgtgggacgtcttatcgacaacatttcc
aaggatttgacgagtctcaagtcgaaagtgaatgatttgcagtcaccagaagcggcgcca
aaagttcctcaggctcctgcgacgtctcaaaatagtcccgtacgcaccgttactcgtgcc
cggaggaaagcaggtcttggtccgcgcacaaatcaacgtcacaacgcgtatcaaaacgac
ccggacagcttatgcggcataattttctgcgattcgaagcacattgccaaggctttgttc
agtcttttctgcgaaatgtcgaaacatgacccagaattgacttatttgaatgttcaatac
acgatcgataagacggcggatccagttttggagccaaaagaagccgaaacggagcaccgg
aagcaagaagatgtcctaaaacggttccggatgcacgattgcaacctcctaattggcact
tctgtcctcgaagaaggcatcgaactgccaaaatgcaatttagtggtgcgctgggacccc
ccaaaaacttatcggagttatgtgcaatgcaaaggacgtgcccgggcagctcaagcttac
cacataatcctcgttgcgccgaaaatttacgcaaattccgacgaaaactccttgccggaa
gcgataaatccgaaaaatcacaagttaatttgccacgcgggagaagctgatgaaagtttg
tacgtgaaaattgacgaaaaaattgaagaactgacagaaaatgaaccaaaaattgacgaa
tccgagtcaaaagtcgaagaaatcacggaaaattctgaagaaaaagacccagaagaacca
aaatcgctcgaattaccaaccgaatgtttgcataaaaacttcattccagccattgacgaa
gcaaaaaagtcacgtgggttgtcactcatgcactccgctaccgaagaaatgatcgaaaag
ctcgccgaatacatcgaaatcgagaaaatgttgctccggaaatgcatgaacaccgaaccg
agtcaacgagaattcgaaaattctgaaaaatatctcaaatgtgtcgctgcttacaagcct
cccgatgccgaaacggaagtttttgtcgatttatcgaatgccatagcgctcgtgaataaa
tattgtgccaaattgccaagcgatacttttacgaaattgacgccgttgtggagatgttgc
cgtttaacacgaggcgaaagtacattgtatcaatacacgataagacttccgattaattcg
cccttgaaatatgacatcacgggacctccgatgccgaatcgggtgcttgcgaggaaggtt
tgcgcattgacagcgtgcaaaacgttgcacgaatccggcgaattggacaataatttgcag
ccaattgggaaggaagggttcaaagcgttcgagtcggattgggaaaattttgagctggaa
caagaagatgaggcgattgtgaatgagaatacggagccgagaccgggaacgacgaaaagg
aggcaatattactataaaaggatcgcatccgctttcagcgattgtcgaccaacagtgggc
accaaaacgtacttttacttcatcaatatgaccttgacgtgtcccattccggaggaacaa
aacacgagagggcgcaaagtgtatccgcccgaagattctccgcaaggcttcggcatccta
accacaaaacgcatccccaaagtcagcgcttttccgattttcacgcgttccggcgaagtt
cgtgtctcgttgcagctcatctcgaccgacatcatcttgaacgagaatcaactgaaaatc
gtcaacatgttcattaactacactttcacgaatgtcctgcgtctccagaagtatttgatg
ctttttgatcccgaagcgactgaaaattgcttcttcattgttccaacaatcacggcgaaa
aatgacaaaagtatccacgtcgattgggaatttttggagatgatcgccgaaaacatcaac
atgacgccgcaatttgtttccgacgaaatccgcaaggcgcagagcttcgatgcgaatatg
ttcaaagatgccgtcgtcatgccttggtaccggaatcaggatcaaccgcaatatttctac
gtagctgaaatttgttatcatctgtcgccaaatagttcgtttccgggcgacaattattcg
acttttaaggaatattacttcaaaaaatacggcatcgagatacagaatcaaaaacaaccg
ttgctagatgtcgatcacacgagcgcccgattgaattttttgacgccgcgatacgtaaat
cgcaaaggagtcgcccttcccacgagttccgaggagacaaaacgcgccaaacgcgagaat
ttggagcaaaaacagattctcgtgcccgaactttgtacaattcatccgttccctgcctcc
ctttggcgagctgcggtttgtcttccgtgcattttgtaccgttttaacgccttgctgctt
gctgacgagatccggaaacaagtttcgcgcgacattggcttgggttgtcaagacatcgaa
gaggaggactttgaatggcccatgctggattttggatggtgccttgcggatgtgctgaaa
aagtcgagagaagcaaaattgcaagcgcaaaaattggtgaatggagaagaaaaggaagaa
attgtcgaaaattctgaaataaaaacgccggaaaaggaggaaaaattagaaaatgacgaa
gaaaagaaggaaaatggagaagatgaggagccgagtgcgaatgaattgttggaggaagcg
acgaaaaaggcaaataatgagttggaaattgggacgtggtcgaatgagatggcgaaaaat
atcaaaaatgatctggaagactttgatgatgagctggatggatggggattgccgtcgaat
gtttcgatgtgtacgaggaaaaatacgcaaattcgttacggctcacccacatcttgggaa
ccaatgggcagcaaaatgaaccacaacccgcaaaacccaatgggcgacttgtactactcc
gactccgagatgtctttccgctccgacgacgactccgactttgacaattccgatgacgaa
gccgaaaatggcggcttaaaaatcgaattcaagtcagataacgtcgcggaagccatcgaa
tctgaaaaggacattctcaaacgtcaacgccaacttgacattatcaagacaatcaacaaa
ggacaggaacttccgcaagcccaattcgaaggtttcaactgcatggaagccttcgacaac
gacgaatccatgcaaatggtcgaacggaagatcaaatggcacgaaaccgagttcgaacgc
tgcaaagaagagtcaaaaacggaaattttatcgtcaaaaatgctcgtgaaaagccacgaa
aaactcataatcaaacgaaaaagcggcaaatctgacgctattacgcccgaaaatgaagaa
aacgtgaatttaatggatctcgtgccttacatggaggaacgtgaagtagctgaaattctc
ggatgttcgttggagcaagtgcaaaaactgacaatcgatcaactttttgccctaaatgag
gcttatttggctcgtgtgacgctggaaaaggcagaaatcgttggagttggggacattttc
gatcgttttaatgaccgtgcattgtacgacgggcaaaaaatgctcgtgattcggtatcca
gatgtccgttgcagaccaatttcggaagatttaacaaaagttgacttccataaaacggat
gaaatttatcgggaactcgaaaaaacaggaaatttcagttttgactaccagccagacttg
gaaacgcatccaggaccaagcccaagtatcattttgcaagctttgacgatgtcaaacgcg
aacgacgggataaatttggaacgattagagacgattggagattcatttttgaaatatgca
atcacaacttacctctatttgacgtacgaaaatgtgcatgaaggcaaattaagtcacctc
cgaagcaagcaagtgagtaatttgaacctttatcgcttgggtcgtcgaaaaattctgggt
gaaagtatgatagcgacgaaattcgagccacacgataattggctgccgccttgttactac
gtcccaaaggagttggaacaagcattaattgctgccaaaatccccgcttgtcactggaat
ttagcggatttgccgaatatcaaacaattaccgagcgaggaaatttgtcgtttggtcaaa
gaacgcgccgaagagatgggcttgcttgatgacgacgacgaaagtgacgaatctctgcct
ccggacgaagaagaaaatgttgatcccgaagattttccgtgtttcatcccatataacctc
gtgacgcagcacagtattcccgataaatccatcgcagattgcgttgaagccctaattggc
gcttacctgatcgaatgtggacccaaaggagcgttacttttcatggcttggctcgggatt
cgggtacttccgatgcgaaaatcgctggaaaatgtcaaaaaaacgagaaaattcgaggaa
atgtacgacgattggaaaatcccaagatctccgttgcttcatttctcgccccatgttgat
gaaagtctcgattgtctcctcgatgggtacgaaaaattcgaggaagccatcggttacaag
ttccgggatcgatcttatctccttcaagcgatgactcacgcctcattttcgccgaatcgg
ttaacggattgctaccagagacttgaatttttgggcgatgcagtcttggattacctcata
acgcgtcatttgtacgaagatccgcgtcaacattcgccgggggctctcacggatttgcgt
tcggctttggtgaataacagtatttttgcgtctcttgcggtgcggcatggatttcacaaa
tatttcaggcatttgtcgcccgggttgaatgacgtcatcgatcggtttgtgaggattcag
aacgaaaatgggcattgcatcagtgaggagttttatttgttgtcggaagacgaatgtgac
gaagcggaagatgtcgaagtgccaaaagcgcttggagatgtctttgaatctgtggcggga
gcgatttttttggactcgtttatgtcactggatagcgtgtggaaggtttatagttcgatg
atgaatccggaaattgagcaatttagcaattctgtgccgaagtcgccgattcgggagttg
ctggaattggagccagaaacagcaaagtttggcaaacccgaaaaacttgccgatggtcgt
cgagttcgtgtcaccgtggaagtttttggcaaaggaacgtatcgcggcatcggaagaaat
tacagaatcgccaaatgcacagcagccaaatgtgcattgcgacaattgaagaaacaagga
cttatcaataggaaacactaa
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integrated database retrieval system
