KEGG   Culicoides brevitarsis: 134836094
Entry
134836094         CDS       T10947                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
cbri  Culicoides brevitarsis
Pathway
cbri03013  Nucleocytoplasmic transport
cbri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134836094
  09122 Translation
   03013 Nucleocytoplasmic transport
    134836094
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbri03019]
    134836094
   03041 Spliceosome [BR:cbri03041]
    134836094
Messenger RNA biogenesis [BR:cbri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     134836094
Spliceosome [BR:cbri03041]
 Complex C
  Other components
   EJC/TREX
    134836094
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    134836094
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 WDR55 EIF3I WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 Beta-prop_NOL10_N Beta-prop_EML eIF2A Beta-prop_HPS5 RMC1_N Beta-prop_WDR35_TULP_N DSE1_N Tricorn_2nd NBCH_WD40 WD40_RFWD3 Beta-prop_TEP1_C PAC11 WDR90_beta-prop_4th CFAP251_N Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st TRM82_WD Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_ELP1_1st Beta-prop_WDR41 Beta-prop_WDR35_2nd PD40 Beta-prop_DCAF4 DPPIV_N baeRF_family5
Other DBs
NCBI-GeneID: 134836094
NCBI-ProteinID: XP_063707357
LinkDB
Position
3
AA seq 323 aa
MVMAKKSVVELQEYFKTHNKIREQKAHSSKVHSVGWNCDGRRLASGSFDKTVTIFNLEKD
RLNKESTYRGHAGSVDQLCWHATQPDLLSTASGDRTVRIWDIRAEKCSHTIPTKGENINI
TWSPDGNCIAVGNKEDLVTFIDTRTCKIRAEEQFNFEVNEIAWNNTSDLFFLTNGQGAIH
ILSYPNLELQHVLRAHPGTCICIEFDPTGKYFATGSADALVSLWDAEELACLRVFSRLDW
PVRTISFSHDGKLLASASEDLIIDIGHTETGEKIADIPVDAATFTVAWHPKQYLLAFACD
DKDGSDRRRDAGNLKVWGWTDSS
NT seq 972 nt   +upstreamnt  +downstreamnt
atggtgatggcgaagaagtcagtggtagagttgcaggaatatttcaagactcacaacaaa
attcgggagcagaaggcacattcgtcaaaggtccactccgttggatggaattgcgatgga
agacgccttgcttcgggatcctttgataagacagtgacgattttcaatctggaaaaggat
cgattgaacaaagaaagcacttatcgcggtcatgccggctccgtcgatcaactttgttgg
catgcgactcaaccagatttactttcaactgcttctggcgaccgaactgttcgcatttgg
gacattcgagcggaaaaatgttctcacacaatccccacaaagggcgaaaatatcaacatt
acttggtcccccgatggaaattgcatcgctgtgggcaacaaagaggatttagtgacgttt
attgatacgcgaacctgcaaaattcgtgccgaggagcaatttaatttcgaagtcaacgaa
atcgcttggaacaatacgagcgatttattcttcctcacaaacggacaaggtgccattcat
atcttgagttatccgaatctcgaacttcagcacgttttgagggctcatcctggcacgtgt
atctgcatcgaattcgatccgacgggaaaatatttcgcaaccgggagtgctgatgctttg
gtttcgctctgggatgccgaggaacttgcttgtttgcgagttttttcgcgacttgattgg
cccgtgagaacaatcagcttctcgcacgacggaaaattactcgcttctgcaagtgaagac
ttgattattgacattggacacacagaaacgggcgaaaaaatcgccgatattccagttgat
gcagcaacttttaccgtggcatggcatccgaagcagtatttactcgcgtttgcgtgcgac
gataaagacgggagtgacagaagacgcgatgcgggcaacttaaaagtatggggatggact
gattcgtcataa

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