Culicoides brevitarsis: 134836540
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Entry
134836540 CDS
T10947
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein-like
Organism
cbri Culicoides brevitarsis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Laminin_B
Ig_3
I-set
Ig_2
ig
V-set
EGF_laminin
EGF_LMN_ATRN
C2-set_3
Motif
Other DBs
NCBI-GeneID:
134836540
NCBI-ProteinID:
XP_063707794
LinkDB
All DBs
Position
Unknown
AA seq
2422 aa
AA seq
DB search
CNESEFKCNDGTCIPQAYKCNSRADCRDGEDEENCHCPDDQFKCDDNTCISEDKICNNVH
DCSNGEDEEDCEHNTVSTTPKDRFFCPLGKFTCTDLTCISIVGRCDGKYDCPLDRSDEED
CPCSRDSWQCDFGQCIAKEKRCNGNIDCPDDISDERNCSTCKANEFKCGNGVCIKANLRC
DGRFHCTDYTDEHGCSNSTGIDICSDGQFQCPSGGCIDEQSVCDGVPHCPQGEDEDPHKC
ECKSYESKCQRGGGCFTEVQRCDKIIDCLDSTDEKNCSYSCTYDQYQCSTTDKCINRLRV
CNGEYDCPNGEDEMICECPANEEKCELGGGCYSPKQKCDGIEDCSDGSDEYDCVEHAECA
ESEHLCDSDLCIPKSEVCDGKYDCDDKTDEMGCNDSETSSSENIAKQCRADEFKCGNGEC
ISLEFYCDGTPDCLDNSDEPRHCTSDEPKCEHDQFECDSSCHSMNIKCNGVDDCLDGADE
ENCPVHEHPSGNAPSHRNCPDFECSYDNRCAIRCDGRSECSDGEDERDCPCRSGEFQCDD
GKCIHADKKCDGRPDCYDRSDERNCPTCRSDEFRCDDGTCIDRARHCDRRVDCRDSSDER
NCREYPPYTTPRPTYRPTTQRTDVCSSDEWLCGSGECIPLGSLCDRRADCRDASDERNCP
STPTRHPEVSDNRLNLKTYPNDQIIKERQIREGREVVFQCRDEGPIRAKVRWTRSRGLPL
PPGARDVNGRLEIPNIRYDHSGEYICEAIGYPKSTPGSHVSVNLQVERYNPIVDRPPSAC
GYNQATCMNGECIDRSKICDGHHDCADGSDENSCSSGSRGLCEPNEFKCGNRKCVLKTWR
CDGENDCGDNTDEEGCTPAPFGYPCRHDEFQCRDGQCIPKAFQCDTTPDCHDRSDEIGCS
APVIITPPPPSVTLDVGSILNITCRATGVPVPLVVWRLNWGHVPDNCVSESSGGFGTLMC
RDMRPKDQGAYSCEVINTKGTTFATPDTIVIVNTDTNTVCPNGFFNDLARRPEDCISCFC
FGVSTQCSGANMYSYTLPEPQTSLTVLGVEGPWNGASSLKIGEYRNHDLTATRHGVQLRL
SDIPSPTNQYPYYALPDEYRKNQLKSYGGHIRYEVIYNGRGATNDAPDIIITGNGREIVY
RHATRLLPDQPNPISAIISAGNWYKLDGTYASREEILVVLAKIDNILIKLQYVDGPERGV
ELLHIKLDSAASTDRGFGPAGLVEECRCPAGYRGSSCEECDYGYERQSSGPWLGRCVRVN
EVCRPGTYGNPQQGQPCRPCPCPGTSGNSYATTCSLGRNGDVTCHCDRGYQGSRCEECAP
GYVGNPIAGQPCVPQQVSRCNPYGTESSYPNGQCHCRSGVTGRYCDQCAPGSFYLHQNGC
LECFCNGVTKSCTSSSYYRDKVESSFAGGRSEFSLVSNDQVIANNMPVEGREIVYRNFGV
TDDAVYWSLPAEYLGNKITSYGGNLTYTLRYTPLPSGSASRNSAPDVIIKSHNHQVLHHY
RRDGGVPLSSPSTYIVPVIEEEWQSSLDGTSTTRSQLLTSLSDIEAIYIKATYTTVPEEA
ALEHISLDTASERNYGSGIIAHEVEQCRCVTGTTGLSCEECSPGYFKSTNYPGTCEPCNC
HGHSENCDAKTGQCLDCRHFTTGHNCERCLPGYTGSATRGTPNDCTRDTEYPPGELCDRC
DPEGTVYGRCYPGATSCECKANVVGTYCNQCRPGTFGKSYENPDGCAECFCSGTRADCTE
LNYFREELPAPIFDENHGYRITDRDFSREVENRYEVNSFEAKLSYSFADEGTFYWSLPER
LLGNQILSYGGNLTVTQMTEGRGGYVPDQDVIIRGNGLTLFWQRHNGDDGTYHIPLIETE
WQNLHRTGVRPTSRSDLLTVLANLESVLVRATLKDMTSKSSISDVYLDTAVPQQTAQGRV
HGLEKCRCPAGYKGPSCETCDKNYYRDHHDRSGSLLGACKMCPCEHAESCESGPHNRIVC
HCEPGYTGDRCQSQVSCAEKTTDNGKLECHTRAETETVYPNYCSTYTIIFFNNNEKDYEY
EIVNKDKQIVGKIKRNIDAKSKSEGPPIPTRYPPHQPNIKVTIREPLIQIVEKGEEIRLT
CSGYYIIDRTALPIRWYKEGGSLSSRASQQQHVLYIKNIQIDDSGVYVCEARKGDETVSQ
KVTVTVGKDGQYVRPQISVHPSTVDVEEFQPVEIVCSALSGYPEPQILWERLDEKPFTSS
AYHRDGFLRISSVSKADEGSYRCVGINSVGDHDQIIQIYVRDRSPHPTGIYVIPDRFDTN
EGEDVTLRCESGQRGTVEWIKQGQRELPPRVIVRGDTLVIRHASVEDSGRYLCSVRLPGG
DVQSAHSDVRVSSYRPPTVGPKVREFDRKYVVVQGQDFSLACEASGDPRPSIVWSISGGE
LPSNVQQSGNIIRILNARPENS
NT seq
7268 nt
NT seq
+upstream
nt +downstream
nt
catgcaacgaatcggaatttaagtgcaatgacggaacttgcataccgcaagcttacaaat
gcaatagtcgcgcagattgtagagacggcgaagacgaagaaaattgtcactgtcccgatg
atcaattcaaatgtgatgataacacctgcatatctgaagataaaatatgcaataatgtac
acgattgttcaaatggtgaagacgaagaagattgcgaacacaatacagttagtacaacac
cgaaagatcggtttttttgcccactcgggaaatttacatgcacagatttaacgtgcatat
ccattgtgggacgatgcgatggaaaatatgattgtccgcttgacagatcagatgaggaag
attgtccttgctcacgtgactcatggcaatgcgatttcggacaatgcatcgctaaagaaa
aacgttgtaatggaaatatagattgtcccgatgacatttcagacgaaagaaattgctcaa
catgtaaagccaatgagttcaagtgtggaaacggagtttgtataaaagctaatttgagat
gtgatggaagatttcactgcacagattacacagacgaacatggttgtagtaattctacag
gaatcgacatttgttctgatggacaatttcaatgcccatcaggaggttgtattgatgagc
aatccgtttgtgatggcgttcctcattgcccgcaaggagaagatgaagatccgcataaat
gcgaatgcaagtcctacgagagtaaatgtcaacgcgggggaggatgttttacagaagtac
aaagatgtgataagataattgattgtttagactcgacagatgaaaaaaattgctcttata
gttgtacttatgatcagtatcaatgttctacgactgataaatgtattaaccggcttagag
tttgtaatggcgaatatgattgtcccaacggagaagatgaaatgatatgtgaatgtcctg
ctaatgaggaaaaatgcgaacttggcggcggatgttattctccaaagcaaaaatgcgacg
gtattgaagactgttctgacggaagtgatgaatatgattgtgtcgaacatgctgaatgtg
ctgagagtgagcacctttgtgattcagatttatgcattcccaaatctgaagtttgcgatg
gtaaatatgattgtgatgataaaaccgatgaaatgggatgtaatgattccgaaacatcat
cctcggagaatatagccaagcaatgtagagctgatgagtttaaatgcggaaatggtgaat
gtataagtcttgaattttactgtgacggaacacccgattgtcttgataattctgacgagc
cacgtcattgtacttcagatgagccaaaatgcgaacacgatcaattcgaatgtgattcat
cttgtcactcgatgaacattaaatgtaatggagttgatgattgtcttgatggagcagatg
aagaaaattgtcctgttcacgagcatccttcaggaaatgctccatcgcaccgaaactgtc
ctgactttgaatgcagttatgataacagatgtgccataagatgcgatggtcgctctgaat
gctccgatggcgaagatgagagagattgtccatgtcgatcaggagaattccaatgcgatg
atggaaaatgtattcatgccgataaaaaatgcgatggaagaccagattgctatgatcgca
gtgatgaacgaaattgtccaacatgtcgttcagatgaattccgatgcgatgatggaacat
gcattgatagagctcgtcattgtgacagacgtgtagattgtagagatagttccgacgaaa
gaaattgccgtgaatatcctccatatacaactccaagacctacatatagaccaacaacgc
aaagaaccgatgtttgttcaagtgacgaatggttatgcggttcaggcgaatgtattcctt
taggaagtctctgcgatcgcagagcagattgtcgcgatgcttctgatgaaagaaattgtc
catcaactccaacaagacatccggaagtttctgataatcgcttgaaccttaaaacgtatc
cgaatgatcaaatcattaaagaaagacaaatcagagagggtcgtgaagttgtattccaat
gtcgtgacgaaggtccaattcgtgcaaaagtaagatggacccgaagcagaggattacctt
tgcctcccggcgcacgtgatgttaatggtcgacttgaaatcccaaatattcgttatgatc
attcgggcgaatacatttgcgaagcaattggttatccaaaatctacgccgggaagtcacg
tatctgttaatttacaagttgaaagatataatccaattgttgatcgacccccgtcagctt
gtggctacaatcaagctacttgcatgaatggcgagtgtattgatagatcgaagatttgcg
atgggcatcacgattgtgctgatggatcagatgaaaacagttgtagttcaggatctcgcg
gattatgcgaaccaaatgaattcaaatgcggaaatcgaaaatgcgttttgaaaacatgga
gatgtgacggcgaaaatgattgcggcgataatacagatgaagaaggatgtacgccagctc
cattcggatatccttgtcgtcacgatgaattccaatgtcgagatggtcaatgtattccaa
aagcattccaatgtgatacaactcccgattgccacgatcgatctgatgaaataggatgtt
cagctcctgttattatcactcctcctccgccaagcgtaacattagatgtcggttcaatct
tgaatattacgtgtcgcgcaacaggcgttcctgttccattagttgtatggcgtcttaatt
ggggtcatgtgcccgataattgtgtttctgaaagctcaggcggatttggtactcttatgt
gtcgtgatatgcgcccaaaagatcaaggtgcatattcttgtgaagtaattaacacgaaag
gaacaacatttgcaacgcctgatactatcgtgattgtaaatacagacacaaatacagttt
gccccaatggatttttcaatgatcttgcaagacgacctgaagattgcataagttgcttct
gttttggcgtttcgacacaatgtagcggagcaaatatgtattcttacacacttcctgaac
cacagacttctttgacagttttgggtgtcgaaggtccatggaatggagcatcttcgttga
aaattggagaatatagaaatcatgatttaacagcaacacgccatggcgttcaattacgcc
tctcagacattccatcgccaactaatcaatatccttattatgcgttgcccgatgaatatc
gtaaaaatcaattgaaatcatatggaggtcatattcgttatgaagtaatttataatggta
gaggagctacaaacgatgcccctgatattattataacaggaaatggaagagaaattgtgt
acagacatgcaactcgtttgttgcctgatcaaccaaatcctatttccgcaattatttcag
caggaaattggtacaaattagatggaacttatgcatcaagagaagaaatccttgttgttt
tggcaaagattgacaatattttgatcaaattacaatacgttgatggacctgaacgtggag
ttgaattacttcatatcaaattagattctgcagcatcaactgatcgaggatttggtcctg
caggtttagttgaagaatgtcgttgtcctgcaggatatcgaggatcatcttgtgaagaat
gtgactatggatacgaaagacaatcttcaggtccttggttgggtcgttgcgttcgtgtaa
atgaagtttgtcgtcccggaacatatggaaatcctcaacaaggacaaccttgtcgtcctt
gtccttgtccaggcacttcaggaaactcatacgcaactacatgttctttgggacgaaacg
gtgatgtaacttgtcattgtgatcgtggttatcaaggctctcgctgtgaagaatgtgctc
ctggttatgtaggaaatccaattgcgggtcaaccatgtgttccccaacaagtttcaagat
gcaatccatacggaacagaatcatcttatcctaatggacagtgtcattgtcgttcaggag
taacagggcgttattgtgatcagtgtgcacctggaagcttctatttacatcaaaatggat
gtcttgagtgtttctgcaacggagttacaaagagttgtacaagcagcagttattatcgtg
ataaagttgagagtagttttgctggagggcgttccgaattcagcttggtatcgaacgatc
aagttattgctaataacatgcctgttgaaggacgtgaaattgtctatagaaacttcggag
ttacagacgatgctgtatattggagtcttcctgcagaatatttgggcaacaaaattacct
catatggcggaaatttgacttacacattgagatacacgccattgccttcaggaagtgctt
cacgcaatagtgcaccagatgttattattaagagccataaccatcaagttttacatcatt
atcgtcgtgatggcggagttccattaagtagtccaagtacgtatattgttcctgtcatcg
aagaagaatggcaaagctcattggatggaacatcaacaacaagatcgcaacttttgactt
ctttgtctgacattgaagcaatctatatcaaagccacatacacaacagttccagaagaag
cagctttggagcatatatcgcttgatactgcatccgaacgcaattatggaagcggtatta
tcgctcatgaagttgagcaatgtcgttgtgtcacaggaacaacaggattgtcttgcgaag
aatgttctcccggatactttaagagtacaaactatccaggcacttgcgaaccatgcaatt
gtcatggacattcggaaaattgtgatgctaaaactggacaatgtctcgattgtcgtcatt
tcacaacgggacacaattgcgaaagatgtcttcccggatatacgggatcagcaacacgcg
gtactccaaatgattgtacacgggatacagaatatccgccaggagagctttgtgatcgat
gcgatccagaaggaacagtttatgggcgttgttatcccggagcaacttcgtgtgaatgta
aagcaaatgtcgttggaacgtattgtaaccaatgtcgaccgggaacatttggaaaaagtt
atgaaaatcccgatggatgtgcagaatgtttctgtagcggaacacgcgctgattgtacag
agctcaattatttcagagaagaattacctgcacctattttcgatgaaaatcatggatatc
gtataacagatcgtgacttctcaagagaagtcgaaaaccgatatgaagttaattctttcg
aagcaaaattatcgtattcttttgctgatgaaggaacattctattggagtctccctgaac
gattgcttggcaaccaaattctctcatatggaggaaatcttactgttacacaaatgacag
agggtcgaggaggatatgttcctgatcaagatgtcattattcgaggcaatggtttaacac
ttttctggcaaagacacaatggagatgatgggacgtatcatattcctttgattgaaactg
aatggcaaaatttgcatcgcacaggagttcgacctacttcaagaagtgatttattgactg
tcttggcgaatcttgaaagcgttcttgttcgtgcgacactcaaagacatgacttccaaat
catccatcagtgacgtttatctcgatactgctgttcctcaacaaacagctcaaggaagag
ttcatggtcttgaaaaatgtagatgtcctgctggatacaaaggaccaagttgtgaaactt
gtgacaaaaactactatcgtgatcatcatgatcgttcaggtagtcttttgggtgcttgta
aaatgtgtccttgtgaacatgctgaatcgtgcgaatctggcccacataatagaattgttt
gtcattgtgagcctggatacacaggcgatcgttgtcaatctcaagtatcgtgcgcagaga
aaacaactgacaatggtaaattagagtgtcatacgagagcagaaacagaaacagtttatc
ctaattattgttcaacatacacaatcatattttttaataataatgagaaagattatgaat
atgaaattgttaacaaggataaacaaatcgttggaaagataaaacgaaatatagacgcaa
aaagcaaatcagaaggtccgccgattccaacaagatatcctcctcatcaaccaaacataa
aagtcactatcagagaaccgctcattcaaattgtagaaaagggtgaagaaatcagattaa
catgtagtggttattacataattgatcgaactgcgcttccaataagatggtataaggaag
gcggttcattatcatcacgagcatcacagcaacaacatgtcctctacatcaaaaatattc
aaattgatgatagcggagtgtatgtttgcgaagcgaggaaaggagatgaaactgtttcgc
aaaaggttacggttaccgttggaaaagatggacaatatgttcgacctcaaatatccgttc
atccatcaactgttgatgtagaagaattccaacctgttgaaattgtgtgctctgcgcttt
ctggatatcctgaaccacaaattttatgggaacgtcttgatgaaaaaccttttacttcga
gtgcataccacagagatggattccttcgcatttcatccgtttcaaaggctgatgaaggaa
gctacagatgcgttggaattaactctgtcggcgatcacgatcaaatcattcaaatttacg
ttcgagatcgtagtcctcatccaactggcatttacgttatacccgatcgttttgacacaa
acgaaggagaagatgtaacattacgctgtgaaagcggacaacgaggaactgttgaatgga
tcaaacaaggtcaacgtgaattacctccccgtgtaattgtacgaggcgatacattagtaa
ttcgtcatgcaagcgttgaagatagcgggcgatatttgtgcagtgttagattgccaggag
gcgatgtacaatcagcacattcagatgtaagagtttcatcttacaggcctccaactgttg
gaccaaaagtccgtgaattcgatcgtaaatacgttgttgttcaaggacaagatttctcat
tggcatgcgaagcatcaggagatccaagaccttcgatagtttggagcattagcggaggtg
aattgccatccaatgtacaacaaagcggaaatataatcagaattctcaacgcgagacccg
aaaacagc
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integrated database retrieval system
