Culicoides brevitarsis: 134836935
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Entry
134836935 CDS
T10947
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cbri Culicoides brevitarsis
Pathway
cbri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134836935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbri03019
]
134836935
03041 Spliceosome [BR:
cbri03041
]
134836935
Messenger RNA biogenesis [BR:
cbri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134836935
Spliceosome [BR:
cbri03041
]
Complex B
Other components
Prp19-related factors
134836935
Complex C
134836935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_2
TPR_12
Mad3_BUB1_I
TPR_8
TPR_10
ARM_TT21
ARM_TT21_C
TPR_15
TPR_7
PPR
NRDE-2
SNAP
DHR-2_Lobe_A
IF4E
CTE_SPB4
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
134836935
NCBI-ProteinID:
XP_063708292
LinkDB
All DBs
Position
1:13756411..13759262
Genome browser
AA seq
856 aa
AA seq
DB search
MVIKMQLLEKSIDVDFIEEDLPYEEEILRNAYSVKHWMRYAEHKKNAPGPVLNMLYERAL
KQLPGSYKLWYNYLKARRKQVKGKCVTDPAFEETNHVFERSLVFMNKMPRIWMDYCSFMV
SQCKITKTRNVFDRALRALPITQHNRIWPIYLDFLNKHNIPETAVRVYRRYLKVCPEDAE
DYIDYLVSVERLDEAAQQLANIVDNEHFVSKHGKSNHQLWNELCELISKNPDKVHSLNVD
AIIRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDAYAQ
FEELSLSKQMELVASKAKPTEEDDIDVELRLARFEYLMERRLLLLNSVLLRQNPHNVQEW
HKRVQLYEGKPHEIINTYTEAVQTVQPRLAVGKLHTLWVEFAKFYETNDQLDDARIVFEK
ATQVEYVKVEDLATVWCEWAEMEIRQERFEEALKLMHRATVMPKKKVAYHDDSEPVQMRV
YKSLKLWSLYADLEESFGTFKSCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRA
YEKGIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFQQCLENCPPEFAKALYLLYA
KLEEEHGLARHAMAVYERATTAVKDEERFDMFNLYIKKVAEIFGLPKTREIYEKAIEDLP
ESDAREMCCKFAEMETKLGEIDRARAIYAHCSQMCDPRITADFWQAWKDFEVRHGNEDTM
REMLRIKRSVQATYNTSINMMAAQMMHQTATQSTVSDLAPGVDSMRLLEAKAAEMAVTKE
KPAGVGSNIMFVRGETQGLPEKNKIVNPDEIDIGSDSDEEEEDETEEVKIPVEKQAIPAK
LFGGLKKPDESDEETT
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggtaattaaaatgcaactactggaaaaatcgatcgatgttgactttatcgaagaggac
ttgccgtacgaggaagaaatcctccgaaatgcttattcggtgaaacattggatgcgctat
gcggaacacaagaagaacgctcccggtcccgtgctcaatatgttgtacgaacgagctctg
aaacaacttccgggctcttataaactctggtacaactacttaaaggcacgtcggaagcaa
gtaaaaggcaaatgcgtgacggatccggctttcgaagagacaaatcacgtatttgaacgt
tcgctcgtcttcatgaacaagatgccacgcatctggatggattactgcagcttcatggtg
tcacaatgtaaaatcacaaagacccgaaatgtgtttgatcgcgccttgagggcattaccg
ataacgcaacacaaccgcatttggccaatttacctggatttcttgaataaacacaacatt
cccgagacagcggtgcgagtttatcggcgttacttgaaggtttgtcccgaagatgccgaa
gattacatcgattatctcgtttcggtcgaacgtttggacgaggcagctcaacaactcgcc
aatatcgtcgataacgagcattttgtctcaaaacacggcaaaagtaatcatcagttatgg
aatgaattgtgcgaattgatatcaaaaaaccccgataaagtgcattccttgaacgtagat
gccataattcgaggcggtttgcgacgttacacggaccaactcgggcatttgtggaattcg
cttgccgattattacgtgagaagcggtttgttcgatcgtgctcgcgatatttacgaagaa
gccatccaaacggtcaccacagtgcgagatttcacgcaagtttttgacgcatacgcccaa
tttgaggaactaagtttgagcaaacaaatggaacttgtcgcaagtaaagcgaaacctaca
gaagaagatgatatcgatgtcgaattgagactcgcaaggttcgaatatctcatggaacga
cgtcttttgttactaaatagcgttttgttgcgacaaaatccacacaacgtgcaggaatgg
cataaacgagtccaattgtacgaaggaaaaccgcatgaaatcatcaacacgtacacggaa
gctgttcaaacggtgcaaccacgactcgcagttggcaaattacacacgttatgggtcgaa
tttgccaaattttacgaaacaaatgaccaattagatgacgcccggatagtttttgagaag
gcaacgcaagtagaatacgtcaaagtcgaggatttggcaactgtttggtgcgaatgggct
gaaatggagatcagacaagagagatttgaggaagcgctgaagctaatgcaccgcgctact
gtcatgccgaagaagaaagttgcgtatcacgatgattcggagcccgttcagatgcgtgtt
tacaagtcgttgaagctttggtcgctgtatgccgacttggaagagagttttgggactttt
aagtcttgcaaagctgtctacgatcggataattgatttgaaaatctgtacgcctcaaata
attattaattacggacttttcttggaggaacataattacttcgaagaagcgtttcgtgcc
tatgaaaagggaattgcgctgttcaaatggcccaacgtttacgacatttggaatacgtac
cttacaaagtttttgaaacgttatggcggcacgaaactcgaacgtgctcgcgatttattc
caacaatgtttggaaaattgtcctcctgaatttgcaaaagctttgtatctgctctatgcg
aagctggaagaagaacacggcttggcaagacacgcaatggctgtttatgaacgtgccaca
actgccgtcaaagacgaggaacgcttcgacatgttcaatttgtacatcaaaaaagtcgcc
gaaatcttcggattgccaaaaacgcgcgaaatttacgaaaaagccatcgaggatctgccc
gaaagtgatgcgcgtgaaatgtgttgcaaatttgcggaaatggaaacgaaactcggtgaa
attgatagagctcgtgccatttatgcgcattgttcgcaaatgtgcgatccccgaattacg
gcagatttctggcaggcatggaaagatttcgaagtacggcatggaaatgaagacacgatg
cgggaaatgttgcgtatcaagagaagtgttcaagcgacgtacaatacgtcgattaatatg
atggcggcacaaatgatgcatcaaacggcgacccagagtacggtatcggatttggcgccg
ggcgtcgacagcatgcgattgttggaggcaaaggcagcggaaatggctgtcacgaaggaa
aaacctgccggagttggctctaatatcatgtttgtgcgaggagaaacccaaggcttacct
gaaaagaataaaattgttaatccggatgaaattgatatcggcagcgatagcgatgaagaa
gaagaagatgaaacagaagaagttaaaattcccgtggaaaaacaagctattcccgcaaaa
ctctttggaggactcaaaaaacccgacgaaagtgacgaagaaacgacataa
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