Coenobita brevimanus (land hermit crab): 145399657
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Entry
145399657 CDS
T11894
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cbrm
Coenobita brevimanus (land hermit crab)
Pathway
cbrm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbrm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145399657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbrm03041
]
145399657
Enzymes [BR:
cbrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
145399657
Spliceosome [BR:
cbrm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
145399657
Complex B
145399657
Complex C
U2 SnRNP specific factors
145399657
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
145399657
NCBI-ProteinID:
XP_080128323
LinkDB
All DBs
Position
50:complement(49103984..49183352)
Genome browser
AA seq
746 aa
AA seq
DB search
MSYNRGRGFGFTGFSFAKKQETIPPPPNATLSKHGYHTMTAISQNAISGGCGYGQPRKRP
RDEDEYFDDEDESFEGAYQPAPGSPGPQRKDSDSDEDPLDAFMAGIEQEVKRTKNKGGAE
KKEIKGVRDDIDEEDDEESYYRYIQENPNAGKQQEDSEDEIEYDEDGNPIAPKKPKYIDP
LPPIDHSAIEYSDFTKNFYQEHEDIAALSPTQVHELRTKLGIKVTGFDAPKPVTSFGHFG
FDEALMKAIRKSEYTQPTPIQSQAVPIALSGRDAIGIAKTGSGKTAAFIWPMLVHIMDQR
ELAPEEGPIGLILAPTRELAQQIYAEARRFGKVYNIQVVCAYGGGSKWEQSKALECGAEI
VVATPGRMIDMIKMKATNLQRVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLLFSA
TFKKKVERLARDVLTDPVRVVQGELGEANQDVTQIIRLLKSGSHKWSWLTQRLVEFMSAG
SVLIFVTKKANAEEISNNLINKEFEALLLHGDMSQFERNEVITAFKKKEKPILVATDVAA
RGLDIPHIRTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTDKDKEFAGHLVRNLEG
AAQEVPSELLELAMQSAWFRKSRFKQGKAKALGGRGLGFRERPGLGSNTPTDGSGEGGGS
SSGCGGSCEDSGSGVINAVGPASQAYGGGDPSMTGPATNRLAAMKAAFHSQYKSQFTAAS
PDTSWTITRTSTNQPSQRRRKSRWDD
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgagctacaacagaggtcgaggttttggtttcactggtttctcatttgccaagaagcaa
gagaccattccccctcctcccaatgccaccctcagcaagcatggatatcacaccatgact
gccatcagccagaatgccatttctgggggttgtggatatgggcagccacgcaagagacct
agggatgaggatgagtattttgatgatgaagatgagagttttgaaggagcataccaacca
gcaccaggcagcccaggaccacagaggaaggattctgactctgatgaggatcctcttgat
gcattcatggctggcattgagcaagaggtaaaaagaacaaagaacaaaggaggtgcagag
aaaaaggaaataaaaggtgtccgtgatgacattgatgaggaagatgatgaagaatcatac
tacagatacattcaagagaatcctaatgctggaaagcaacaggaggacagtgaggatgaa
atagagtatgatgaagatgggaatcccattgctccaaagaagcctaagtatattgaccct
ctgccccctattgaccattcagccattgagtactcagacttcacaaagaacttttaccag
gagcatgaggatattgctgctctttcacccacacaagtccatgaactcaggaccaaactt
ggcattaaggtcacgggatttgatgcaccaaagccagtaacgagctttgggcactttggg
tttgatgaagcactaatgaaggcaattcgcaagtcagagtacacacagcccacccctatc
cagtcccaggcagtccccattgcacttagcggaagagatgcaatcggaatagccaagact
ggaagtgggaagacagcagcattcatctggcccatgttggtacacattatggaccaaagg
gaactagcaccagaggaaggaccaattggtttgatcttagcacccacacgtgagctggct
cagcagatatatgcagaagcacgcagattcggcaaggtttacaacatacaggttgtatgt
gcgtatggtggtggcagcaaatgggagcagagcaaagcattggagtgcggggcagaaatt
gttgtagcaacacctggccggatgatagacatgatcaagatgaaagccaccaaccttcag
cgtgtcacattcctggtgcttgatgaggctgaccgcatgtttgacatggggtttgagcca
caggtacggtccatttgtgaccatgttcgaccagacagacaaacactgctgttctctgcc
acatttaagaagaaagtggagcgtctggcacgagatgttcttactgaccctgtcagagtt
gttcagggtgaattgggagaggctaaccaggatgtcacacagatcattcgactgcttaaa
tctgggagtcacaagtggtcatggcttactcagcgattagtagaatttatgtcagctggg
agtgtcttaatatttgtcaccaagaaagctaatgcagaagaaatcagtaacaatttaata
aacaaggaatttgaggcactgttgcttcatggagacatgagtcaatttgaacggaatgaa
gtcattactgcatttaagaagaaggagaaacccatcctcgtggcgacagatgtagctgca
cgaggcttggacatcccacacatcagaactgtcatcaattatgatgtggctcgagacata
gacacacatacccatagaattggacgaacaggccgtgctggtgagaagggaacggcttac
actctcgtgacagacaaagacaaagaatttgctggccacttagtaagaaacctggagggg
gcagcacaggaagttccctcagagttgctagaactggccatgcagagtgcttggtttcga
aagtctcggtttaagcagggtaaggccaaagctcttgggggacgaggacttggtttcagg
gagcgaccgggtcttggctccaacacgccaactgatggctcaggagagggaggtggcagc
agtagtggttgtggaggcagctgtgaggacagtgggagtggtgttatcaatgcagtgggt
ccagccagtcaggcttatggtggtggtgaccccagcatgaccggaccagcaacaaacaga
ctggctgctatgaaggctgccttccactcacaatacaagagtcagttcacagcagccagt
cctgacacctcttggaccatcactaggacatccactaaccagccgtcacagcgccggaga
aaatcaagatgggatgactaa
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