Coenobita brevimanus (land hermit crab): 145415130
Help
Entry
145415130 CDS
T11894
Symbol
tst
Name
(RefSeq) superkiller complex helicase subunit twister
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cbrm Coenobita brevimanus (land hermit crab)
Pathway
cbrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145415130 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrm03019
]
145415130 (tst)
Enzymes [BR:
cbrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
145415130 (tst)
Messenger RNA biogenesis [BR:
cbrm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
145415130 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
145415130 (tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
ATPase_2
nSTAND3
DUF3516
TnsE_C
DBC1
YNL162W_A
Motif
Other DBs
NCBI-GeneID:
145415130
NCBI-ProteinID:
XP_080140676
LinkDB
All DBs
Position
101:72470513..72479880
Genome browser
AA seq
1211 aa
AA seq
DB search
MDVLGRLLGGLPPIIPNLRDQIEEYLLTPEKLPIHDPVHSRRFFPRQPDPTRLYSISVHP
PSMRLEVERDPATGEITGIVELANKDAGATAKNSLSMRRAPGPPEEIVRGSSTNFPFWPG
GFPEPVLDKESIDAEFNLDPSNYLTKHPKLSGGMAFEIPKKVPEEEKEKPEEKPELVVSI
TDMLNVDESVLKIFDDKEEKKIKKVTGLSLEELNEEDKTLVQNFSIEPPKKEEFVLNISD
SSRSTHIIAKNTEWAENIDINAPVDDFSSQVPNPACTYPFELDTFQKQAILRLEKHDCVF
VAAHTSAGKTVVAEYAIALTLKHMTRAIYTSPIKALSNQKYRDFKIKFEDVGLLTGDIQI
NPKASCLIMTTEILQSMLYNGSDLIRDLEWVIFDEVHYINNAERGHVWEEVLIMLPDTVN
IVLLSATVPNTIEFADWIGRIKRRKIYVISTSKRPVPLEHFLYTGTGGKSKDERFLVVDA
NGTFVQKGYNDAVTAKNEKKKSQQTQGPKFGRQHLGEKQEKNMWIGLIDHLSKRDLLPVV
AFTLSKKRCDSNASQLMSQDLTTNREKGEIHSFIKKCVDKLQGSDKVLPQVIHMKELLTK
GIGVHHSGILPILKEVVEMLFAKGLVKLLFATETFAMGVNMPARCVVFDSIRKHDGEAFR
DLLPSEYIQMAGRAGRRGLDSTGTVIILCKTEVPEMADLHRMMLGKPTKLQSQFKLTYSM
ILNILRVERISVQDMMKRSFSEALQMANQSKYESELKVAEEKLTKEPEFTCLMCKDVEQY
YAAAKEYVQQRKHVFNLILGFPGVVKAMSPGRIVVICYCQYQYHLACLLKVDTKDQNKLS
VLILRNKNEPNTLPKEQLELREILAASQEKFDILEDTSDQALLEITPRNLAAITNKVIKI
DPVKIIDNIKKRQIPRFKNDPPSQSVMEAIGELQRLNESGGDSLSYLDFMTDLGIREITA
VSEVHKHDIWKKKVRENSCLDCSQFKEHFIVAYAKLSLREEIGRLKFLMSEEALQLHPEY
QMRIKVLKDLKYIEDNNTVTLKGRVACEMGNHELMVTELVLENVFAETPIEEIAALLSSM
VFQQKNCSEPTLTAELGKGIKKFRNVAKRIGEVQKDCGLPETVGDFVDQFNFGLTEVVFQ
WANGMEFNKIMELTDVQEGIVVKCIQRLDETLKDVRNAAHIIGDPNLKEKMELASTAIKR
DIVFTPSLYTQ
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcctaggaagactgcttgggggcctccctccaatcatccctaaccttcgagat
cagatagaagaatatcttctgactccggagaagctgcccattcatgaccctgtccactca
agacgattttttccaaggcagccagatccaacgcgactatatagcatttctgtgcacccc
cctagcatgcgtctggaagtagaacgtgacccagcaacaggcgagataactggcatagtg
gagttagctaacaaagatgctggggcaactgctaagaactctctctccatgaggcgggca
ccaggtccaccagaagaaatagtgagaggatcttccactaactttccattttggcctgga
ggatttccagaaccagtccttgataaagaatccattgatgcagaatttaacctggacccc
agcaactacctcaccaagcatccaaagctttctgggggtatggcctttgaaattcctaag
aaagtgccagaggaggaaaaggagaagcccgaagaaaagcctgaactagttgtaagtatt
acagacatgctgaatgtcgatgaaagtgtattgaagatatttgatgacaaagaagaaaag
aaaattaagaaagttactggcctgtctcttgaagaattaaatgaggaagacaagacacta
gttcagaatttcagcattgaacctcccaaaaaggaagagtttgtgttaaacatcagtgac
agctcaagatctacacacattattgctaaaaatactgaatgggctgaaaatattgatata
aatgcacctgttgatgactttagttctcaggtaccaaacccagcttgcacatatccattt
gaattggacacatttcagaaacaagctattcttcgtttggaaaaacatgactgtgtgttt
gttgctgcacatacttcagctggtaagacagtagttgctgagtatgctattgctcttact
ctaaagcacatgactagagcaatatacacatctccaatcaaagccctctctaaccagaag
tatagggacttcaagattaaatttgaagatgtaggtctgctgacaggtgacatccagatt
aatccaaaggcctcttgcttgatcatgacaacagaaattcttcagtccatgctttataat
ggtagtgatttaattagagatttagaatgggttatatttgatgaagttcattatataaat
aatgctgaaagaggacatgtttgggaagaagttttgattatgcttccagatacagtcaac
atagtgctcttatctgcaactgttcccaacaccattgaatttgcagattggattggcagg
attaagagacgaaagatttatgtgatcagtactagtaaacgcccagttcctttagaacat
tttctctacactggcacaggtggcaagagcaaagatgaacgctttctggtggtagatgcc
aatggaacgtttgtacaaaaggggtacaatgatgctgttactgctaagaatgagaaaaag
aaaagtcagcaaactcaaggacctaaatttgggagacagcacctgggagagaagcaggag
aagaatatgtggattggtctcattgatcatcttagtaaaagagaccttttgccagtagtt
gctttcactctttccaagaagcggtgtgatagtaatgccagtcagttaatgagtcaggat
ttgaccacaaacagggagaaaggagaaattcattcatttatcaagaaatgtgttgataaa
ttgcagggctcggacaaagtgttaccacaagttatacatatgaaggaattgttaaccaaa
gggattggtgttcaccacagtggcattctgcctattttaaaagaggtagtggaaatgctg
tttgccaaaggactagtaaagctgttgtttgcaacagaaacatttgccatgggtgttaat
atgcctgcaaggtgtgttgtatttgactctatcaggaagcatgatggagaagcttttcgt
gatttgctgccaagtgagtatattcaaatggcagggcgtgcaggtcgacgtggtctggat
tccactggcacggtcattattctctgtaagactgaggtcccggagatggctgacctccat
cgcatgatgcttggcaaacctaccaagctccagtctcagtttaagttaacttactcgatg
attttgaatatcctgagagttgagaggattagcgtacaagacatgatgaagagatcattc
tcagaagctttgcaaatggcaaatcagagtaagtatgaaagcgaactaaaagttgcagaa
gaaaaactaactaaggaaccagaattcacatgtttgatgtgtaaggatgttgaacagtac
tatgcagctgcaaaagaatatgtccaacaaaggaaacatgtcttcaacttaattcttgga
tttccaggagtagtaaaagccatgagccctggaagaattgtagtaatttgttactgtcag
taccagtaccatttagcttgccttttgaaagtagatacaaaagatcaaaacaaactatca
gtgttgattttacgaaacaagaatgaacccaacactctcccaaaagaacagcttgaactg
agagagatccttgctgccagccaagaaaagtttgatatcttggaggacacatcagaccag
gctttactagaaatcacacctcgtaacttggcagctataacaaataaggttattaaaatt
gatcctgtaaagatcatagacaatataaagaagagacagattccaaggtttaaaaatgat
cccccttctcagtcagtcatggaagctataggggaactgcaaagattaaatgaatctggt
ggagattccctgtcatacttggacttcatgacagatcttggcattagagaaatcacagct
gtgagtgaagtgcacaaacatgatatctggaagaaaaaagtgcgtgagaattcttgctta
gactgttcacagtttaaagagcactttattgttgcctatgcgaagctgagccttcgtgaa
gaaataggccgcctgaaatttctcatgtctgaagaggctcttcaactccatcctgaatat
cagatgaggattaaagttctgaaagatcttaagtacattgaggacaataacacagtaacc
cttaagggtagagtggcttgtgagatggggaaccatgaacttatggtaacagaactggtc
ctagagaatgtgtttgcagaaaccccaatagaagagatagctgcccttttgtcaagcatg
gtgttccagcagaaaaattgcagtgaaccaacgctgacagctgagttaggaaaaggcatt
aaaaagttcaggaatgttgcaaagcgcattggagaagtccaaaaagactgtgggcttcct
gaaacagtgggggactttgtagatcagtttaattttggtttaacagaagtagtatttcag
tgggcaaatggtatggaattcaacaaaataatggaactgactgatgttcaggaaggaatt
gtagtgaaatgcattcagcgtttagatgaaacactgaaagatgttagaaatgctgcccat
attattggcgatccaaacttgaaggagaaaatggagttagcttcgacagccatcaagaga
gatattgtcttcacacccagtctttatactcagtag
DBGET
integrated database retrieval system
