Clostridium botulinum E3: CLH_1130
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Entry
CLH_1130 CDS
T00767
Name
(GenBank) RNA-metabolising metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cbt
Clostridium botulinum E3
Pathway
cbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLH_1130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbt03019
]
CLH_1130
Messenger RNA biogenesis [BR:
cbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLH_1130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ACD53941
LinkDB
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Position
1196461..1198128
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AA seq
555 aa
AA seq
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MKNERAKVRIIPLGGINEIGKNITAIEYKEDIVVIDCGLKFPDDDMFGIDIVIPDVSYLI
KNKDRVRGIFLTHGHEDHIGALPYVLKQLNVPIYGTKLTLGIVETKLREHGLLSTTELVT
IKPRDTIKLNNVSVEFIKTNHSIADSVAIAVHTPLGAVLHTGDFKIDYTPIDGEIMDFAR
FAELGKKGVLAMLADSTNVERPGYTMSEKTVGESFIRLFDNAKGRIIVATFASNIHRIQQ
IITAAQIYGKKIAVSGRSMENIVQVAIELGYLTIEKDVFVSVDQISKYPNEKIVIITTGS
QGEPMSALARMAASEHKKINIIEGDTVIISATPIPGNEKLVSKVINQLFKKGAEVIYESL
EKVHVSGHACQEELKLMQRLVKPRFFIPVHGEYRHLKQHGELAISLGLSEKNLLIPENGD
VIEITRKSIKKSCTVSAGQIFVDGLGVGDVGNIVLRDRKHLSQDGILTVVVTMERHTANV
IAGPDIISRGFVYVRESEGLMDEAKELVRKVLKDCEEKNITDWATLKSRMRDELRELLYE
KTKRKPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaaagagctaaggttaggattattcctttaggtggtataaatgaaatcggt
aagaacatcacagccattgagtataaagaagatatcgtagtaattgactgcgggcttaaa
ttcccagatgacgatatgtttgggattgatattgttattccggatgtttcatacctaatt
aaaaacaaagacagagttagaggaatatttttaacacacgggcatgaggaccatataggt
gcattaccttacgttttaaaacaacttaatgttcctatttatggtactaaacttactctt
ggaatagttgaaacaaagttgagagagcacggtttactttcaactacagaattagttaca
ataaagccaagagatacaataaagttaaataatgtttcagtagaatttataaaaactaat
cactcaattgcagattcagtagcaattgcagttcacacgccacttggcgcggtacttcat
acgggggattttaaaatcgattatactccaattgacggagagataatggatttcgcaaga
tttgcagaattgggtaaaaaaggcgttttagcaatgttagcagattcaacaaatgttgaa
agaccaggttatacaatgtcagaaaaaacagtaggcgagagctttattagacttttcgat
aatgcgaaaggcaggattatagttgctacatttgcatctaatattcatagaattcagcaa
attataacagcagcacaaatttacggtaaaaaaatcgctgtatctggaagaagtatggaa
aatatagttcaagttgcaatagaattgggatatttaactatagaaaaagatgtatttgta
tctgtagatcaaatatcaaaatatcctaatgaaaaaattgttataataacaacaggaagc
caaggagagccgatgtcagcattagctagaatggcagcatctgaacataaaaagataaat
ataattgaaggtgacactgtaattatttcagcgaccccaattccgggtaatgaaaagcta
gtttctaaagtgattaatcagttattcaaaaaaggtgctgaagtaatatatgaatcttta
gaaaaagtacatgtttctggtcatgcttgtcaagaagaattaaaattaatgcaaagacta
gtaaaaccaagattttttattccggtgcatggggaatatagacatttaaagcaacatgga
gaattggctataagtcttggactttcagaaaaaaatcttttaatacctgaaaatggtgat
gtaatagagattacaagaaagagtattaagaaaagttgtactgtttcagctggccaaata
tttgtggacggactaggggtaggcgatgttgggaatatagtattaagagatagaaaacat
ttatctcaagatggtatattaactgttgtagttacaatggaaagacatactgctaatgta
attgcaggtccagatattatttcaagaggatttgtatatgtaagggaatcagaaggtctt
atggatgaagcaaaagaacttgttagaaaagttttaaaagattgtgaagagaagaatatt
actgattgggctacgttaaaatctagaatgagagacgaattaagagagcttctttatgaa
aaaacaaaaaggaaaccgatgattttaccaataattatggaaatttaa
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