Clostridium botulinum E3: CLH_3088
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Entry
CLH_3088 CDS
T00767
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cbt
Clostridium botulinum E3
Pathway
cbt03030
DNA replication
cbt03430
Mismatch repair
cbt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLH_3088
03430 Mismatch repair
CLH_3088
03440 Homologous recombination
CLH_3088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbt03032
]
CLH_3088
03400 DNA repair and recombination proteins [BR:
cbt03400
]
CLH_3088
Enzymes [BR:
cbt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLH_3088
DNA replication proteins [BR:
cbt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLH_3088
DNA repair and recombination proteins [BR:
cbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLH_3088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ACD51563
LinkDB
All DBs
Position
complement(3329381..3332989)
Genome browser
AA seq
1202 aa
AA seq
DB search
MSTKNDIKRDTIQNKEKDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVL
YGLVDFYKAAIEYGIKPILGCEVYVAGKSMKIKQPDKDNSTYHLVLLVKNEIGYRNLMKI
VSTASIEGFYYKPRVDHEYLKAHSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEI
FKENFYLEIQNHGMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQT
GKTVDDVNRRRYPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKF
PLPEGEEPYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSAKELIDRLEYE
LQIIKQMGYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIF
ERFLNPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRA
MNYSYSEVDKICKMIPTMLGITIEKALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHS
STHAAGVVIASTPLVQYVPLQKNDEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALK
IIKENRNIDIDLDKIDFDDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAG
ISLYRPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYS
MGRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVIVPGCIRNGISEEAANKIFDNMMD
FASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQ
VLPPDINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDL
SAINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISNDRKRNIDGQISLFASDDIYV
PEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDD
NLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVF
PKVLDRVRELCNEDDLVIIKGRISLKTDELPKLICESIEPLEKINSSKIYLRVQNTIKAK
ELSLNLKELIKDYKGDTPIYIFAADQRQQFRVPRDRWLDMNEESLGVLREFIGEENVKVI
EL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactaaaaatgatataaaaagagataccattcagaataaggaaaaagactttgtt
catcttcatcttcatactggatatagtttattagatggatcgggaaaaataaaagaaata
atggcaaaaacaaaagaacttggaatgaatagtatagctataactgatcatggagtttta
tatggacttgtagacttttataaagcagccattgaatatggaatcaagccaatacttgga
tgtgaagtatatgttgcaggaaaatctatgaaaataaagcagcctgataaagataattca
acatatcatttagttttgttagtaaaaaatgagattggctatagaaacttaatgaagata
gtatctacagcatcaatagaagggttctattataagcctagagtggatcatgagtattta
aaggcacatagtgacggaataatagctcttagcgcttgtttaggcggagaagtacaatca
catgaattaaaaggtaattatgaaaaagctaaggaaacagcacttttatataaagaaata
tttaaagagaatttctatttagaaattcaaaatcatggcatggatgaacaaagaaaagta
aatgaagaaaatataaaattatctaaagaattagggataccattagtagcaactaatgat
gttcattacataaaaaaagatggttataaatcacatgacatattaatgtgcattcaaaca
ggaaaaactgtggatgatgttaatagaagacgatatccttcagatcagttctatttaaaa
tctcctgaagaaatgtgggaaatgttttcttatataccagaggcactagaaaatacagtg
aaaatttctgagcagtgtaattatgaatataaattccatgaatctaagttacctaaattt
ccattaccagaaggtgaagagccatataattatttaaagaatacttgttatatgggatta
atagagaggtatgaggaatttaaagagtttagggggaaggatctaaattatgataaatta
gatgacctaaaatctaaaaatgattctgcaaaagaacttatagatagacttgaatatgag
cttcagataataaaacaaatgggatatattgattatttcttaattgtttgggactttatt
aaatttgctaatgataatggaataccaactggaccaggtcgtggtagtgctgctggttca
ataattgcatatacattaggaataacgaagatagatccaataaagtatagtctaatattt
gaaagattcttaaatccagaaagagtatctatgcctgatatagatagcgatttttgttat
gaaagaagacaagaagtaatagattatgtggtagaaaagtacggagaagataatgtatct
caaattataacctttggaacaatggcagctagagcatgtattagagatgtaggtagagct
atgaattatagctatagtgaagttgataagatatgtaaaatgatacctacaatgcttggt
ataactatagaaaaggcacttgattttaatcctgagcttaaagagatatatgataaagac
gaaagagttaagtcattaatagatatgtcaaaggacttagaaggacttccaagacattcg
tcaactcatgcagctggtgtagttattgcatcaacgccattagttcaatacgtaccttta
caaaaaaatgatgaaatgatagtaactcaatttggaatgactacgttggaagaactagga
ttattgaaaatggatttcttaggtcttagaacattaactgtaatgaatgaggcacttaaa
attataaaagaaaatagaaatatagatatagatttagataaaattgattttgacgataaa
gaagtttataagatgataggggaagggaagactgctggagtattccaattagaatctcct
ggaatggtatccttcatgaaagaattaaagcctgattctttagaagatataatcgccgga
atttcattatatagaccaggtccaatggctgaaataccaagatatatagaatgtaagaga
aatcctgaaaaagttaaatatgaggcaccagagctagaggaaatactagatgtaacatat
ggagtaatggtatatcaagagcaagttatggagatagttagaaagctagcaggatattct
atggggcgaagtgatatggttagaagagctatgtcaaagaagaaacataaagttatggaa
gaagaaagaaagaatttcattcatggaattatagaaaatgatgaagtaatagttccagga
tgtattagaaatgggattagtgaagaagcagcaaacaaaatatttgataatatgatggat
tttgcttcgtatgcatttaataaatcccatgcagcagcatatgcagtagttggatatcaa
actgcatatttaatgaaatattatcctgtagaaatgatagcagctatgttaaattcattt
atgggaagtagtgaaaaagtagtatattatatttcaaaagctgaagaattaggtatacaa
gtacttccaccagatataaatgaaagttttgctaaatttactgttaaaggagaaactata
agatttggtttggcagctattaaaaatgttggtatgaatttaataaatagtgttgtgaaa
acaagggaaaataaaggtaaattcgattcgttatttgattttattagtaagatagattta
tctgctataaacaaaagaactattgaaagtttaataaaatcagggacatttgatagcttt
aagatatatagatcaaaattacttgctgtatatgaaaaaatggttgatagtatttcaaat
gatagaaaaagaaatatagatggacaaataagtttgtttgcatcagatgatatttatgta
ccagaaatagaatatccaaatataaatgaatttgataaacgttcattattaacaatggaa
aaagaaatgacgggattgtatatatcaggtcatccattagatgattatgcacaaagttta
aaatttcaaacttcaaatgaaataggaaaaatattttcacatcatgagttactagatgat
aatttagaaattcaaatgctagatgatgttattaataatgaatctggaattaatgataat
gatagagtgattctaggtggaatattaacacaagtgaataaaaaagttacaagaaataat
acaattatggcatttttacaattagaagatttaactggaactatagaagttatagttttt
ccaaaggtgttagatagagttagagagctatgtaatgaggatgacttagtaataattaaa
ggtagaataagcctaaaaacagatgaattacctaaattaatatgtgaaagtatagaacct
ttggaaaaaataaattcttctaagatatatttaagagtacaaaatactattaaagcaaaa
gaattaagtttgaatttaaaagaattaataaaagattataaaggtgatacacctatctat
atttttgcagctgatcaaagacaacagtttagagttccgagagatagatggttagatatg
aatgaagaatctttaggtgttctaagagaatttattggagaagaaaatgtaaaagtgata
gaattgtag
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