Coxiella burnetii RSA 493: CBU_1148
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Entry
CBU_1148 CDS
T00124
Symbol
mfd
Name
(RefSeq) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbu
Coxiella burnetii RSA 493
Pathway
cbu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBU_1148 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbu03400
]
CBU_1148 (mfd)
Enzymes [BR:
cbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBU_1148 (mfd)
DNA repair and recombination proteins [BR:
cbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBU_1148 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
DUF7267
Motif
Other DBs
NCBI-GeneID:
1209050
NCBI-ProteinID:
NP_820146
UniProt:
Q83CG9
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All DBs
Position
1091625..1095098
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AA seq
1157 aa
AA seq
DB search
MIKVEMTPISPLQPPIPRSIDNRLQWGNLKGDSVSLAISTLAEKNQGPLLLITPDVHSAN
YLHRSLPFFSSADTPILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRLSSGIIISALP
TLLQRLPPADHLEKNTFILSVGEKFSLQENRERLISAGYRSVQQVMEHGEYAQRGSIIDI
YPMGSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLTKEAITHFRQSW
RAKFLGNPQEAPIYQQISEGEAAAGIEYYLPLFFETTQTFFSYLPKNTTVILFEKLETVA
HQFWQEVEHRYEQLRHDLTRPLCPPSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVN
FATENFPPLLIDHKASQPFARLKNFLHEITAIQGGRVLFCAETDGRRETLLEFLKEIDTT
PQAVKNWRTFLAENTRVGLTIAPLDKGVLLSSPPLAIISESQLFGEQIRQRRLEKERKID
PNLLIRNLTELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADNDKIYVPVSSL
YLISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGFTFSIP
EKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAV
QNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDI
IIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMS
LSGIRDLSLITTPPAKRLSVKTFVHDYSPVLIREAILRENLRGGQVYFLHNDVATLAATA
EKLRTIIPEARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN
RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLA
THDLEIRGAGELLGVEQSGQIHDIGFSLYLELLEEAVSALKAGREPQFEKPLHAVSEIDL
GITTLLPEDYVPDVNARLILYKRLANCKNKREIQALKEELIDRFGPLPPAAQHLLQSAEL
RLIANELGIQKINIGSKYGYFHFDKKPAIDLTKLIKLVQTQPQRYQLQGDESLRFILSNP
TPQSKLETIYELIKNLK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttgattaaagttgaaatgactccgataagccctttacaacctcccattcctcgctccatt
gacaatcgactccaatgggggaatttaaaaggtgatagcgtcagccttgcaatcagcact
cttgcggaaaaaaatcaggggcctttgttattaatcacaccggatgttcactcggctaat
tatttacaccgttcattgccatttttttctagcgccgacacccctatcttacattttcct
gactgggaaacattgccatacgattatttttccccccacgaagatattatttctgaacgc
ttgctaacgctttaccgcttaccgcgtttatcgtcaggaattatcatcagcgctcttccc
accttattacaacgccttcctcccgccgatcacttagaaaaaaatacttttattttatcc
gtgggtgaaaagttttctttgcaagaaaatcgtgaacgtttaatatcggcgggttaccgt
tccgttcaacaagtgatggaacatggtgaatatgctcaacgcgggtcgatcatcgatatt
taccccatgggaagcccacttccttaccgaatcgaattatttgacgatgaagtaacaagc
attcgcagctttgatcccgaaagccagcgatccgtagaaaaaatagaatcggttcggttg
ttaccggcgagagaatacccgttaacgaaagaagccattacgcattttcgacaatcgtgg
cgtgcaaaattcttgggtaacccgcaagaggctcctatttatcagcaaatcagtgaagga
gaagcggcggccggtattgaatattatttaccgttgttcttcgaaaccacccaaactttt
ttttcctatttgccgaagaataccaccgttattttatttgaaaaactggaaaccgttgct
catcagttttggcaagaagtagaacatcgttatgaacaattacgccacgatttaacacga
ccgctctgcccgccctcagaattgtttttgtcttttgagcaattaaggatagaaataaaa
aatcatactcaaataaaaattagcgatgcacccatcattgaaaaaacagggcaagttaac
tttgctacggaaaatttccctcctttattaattgatcataaagcttcccaaccgtttgct
cgattaaaaaactttttacatgaaataacggctattcaaggggggcgcgttttattttgt
gccgaaacagacggccgtcgagaaactcttctagaattccttaaagaaattgatacaact
cctcaagccgttaaaaattggcgaacgtttttagcagagaatacgcgagttggccttact
atcgcgcctttggataaaggcgttttattatccagcccgcctttggccattatttcagaa
tcacaactcttcggcgaacaaatccgccaacgtcgcttggaaaaagaacgaaaaattgat
cccaatttattgattcgcaatttaacagaattgcatattggcgaccccgtggttcacatc
caacatggagtcggccgttatttgggcttgcaaaccattaaaaccagcgatcaggaagct
gaatatttaactttacaatatgcggataatgacaaaatttatgtgccagtttcttcgctg
tatttaatcagccgttatgccggtgctgacgcttcccatgctccccttcaaaaactcggc
agcaaacagtgggaaaaaatcaaagaaaaaacacaaaaacatatccgtgatgtggcggcc
gaattattagatatttacagccgccgtcaagcggcaacgggttttactttttctatacct
gaaaaagaatactctcttttccgccaagcttttccttttgaagaaacacctgaccaaagt
gccgccattaatgacgttattgtcgatatgtcttcaaaacgcagtatggaccgcctcatt
tgtggggatgttggttttggaaaaaccgaagtggcaatgcaagccgcttttatagccgtg
cagaataataaacaagtcgctgttttagttccaacgactttattagccgaacaacatttt
tataattttcaagatcgttttgccgactggccggttcgtattgccgctatttctcgctta
cgcacccaaaaacaacgccagcaaattacccaagaactggctgaagggaaaatagatatt
attatcggcactcataaattattaagcaaagatatccgatttaaagatttaggtttatta
attgttgatgaagaacaccgtttcggcgttacccaaaaagaacgaattaaatccttacgc
gcccatgtggatattctgacgctcacagccacgccgatccctcgaacattgaatatgtcg
ctttcaggtattcgcgacttgtcccttattacaaccccgccggcgaaacgcctgtctgta
aaaacttttgtgcacgactacagtcccgtcttaattcgcgaagcgatattgcgcgaaaat
ttacgcggcggccaagtttattttttacataatgatgtcgcaacgctcgccgcaacggct
gaaaaattacgaacgattattcccgaagcccgtcttgcgatcgcccacggtcaaatgcgt
gaacgtgatttggaacgagtaatgtccgatttttatcatcagaaatataatcttttggtt
tgtacaaccattattgagtcagggatcgatattcccactgcgaatacgattattattaat
cgcgcggatcgattcggcttagctcaactccaccaacttcgcggtcgcgtcgggcgttct
catcaccaagcctatgcttatttattaatacctgatcaagaagccctgacggcggatgca
gaaaaacgattgagcgctatttcccaactggatgatctcggtgttggttttaacctggcg
actcatgatttagaaatccgcggcgcaggcgaattattgggcgtcgagcaaagcggacaa
attcatgatatcggattttctttatatttagaattgctggaagaggcggtaagcgcatta
aaagccggacgggaaccccaatttgaaaagccattacacgcagtgtctgaaattgatctt
ggcattacgacgcttttaccggaagattatgtccccgatgttaatgctcgtcttattctt
tataagcgcttagctaattgcaaaaataaaagagaaatccaggcgctcaaagaagagctt
atcgatcgttttggcccgctacccccagcagctcaacatttgctccaatctgccgaactg
cgcttaattgcaaacgaactcggcatccaaaaaatcaatatcggctccaaatatggctat
tttcacttcgataaaaaacccgccattgatctcacaaagttaatcaagttagtccaaacc
caaccccaacgttaccaactgcaaggcgatgaatccctgcgtttcattctttctaatccc
accccccaatccaaattggaaactatctacgaattaattaaaaatttgaagtaa
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