Clostridium butyricum: ATN24_01980
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Entry
ATN24_01980 CDS
T04197
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbut
Clostridium butyricum
Pathway
cbut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATN24_01980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbut03400
]
ATN24_01980
Enzymes [BR:
cbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATN24_01980
DNA repair and recombination proteins [BR:
cbut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATN24_01980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AA_kinase
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ALP88982
UniProt:
A0AAP9RI25
LinkDB
All DBs
Position
1:440732..444232
Genome browser
AA seq
1166 aa
AA seq
DB search
MRLKGLLEPFENSVEFENILGSINNERYPIGIYGIAESGRVYTIDSIFENIDRSMVIVTQ
SDMEAKNIYEDLLLYTNDVHYFPAKEMVFYNIDAISGDLRWARLKVINEILKKKKKIIVT
SIDAFSARYTPHKLFADYTMKFKESDEINLIEVSKKLIQSGYERVEMVEGKGQFALRGGI
LDVFPTCSAYPYRIELFGDEIDSIRTFNTESQRSIDKVKRIEVFPAKEIIITDETISLGK
EKLKKEFDNISKSDTDSARVEKLRNILNKNLESLEETSTFETIDSYLPYFCKETESLFDY
LKDCLFIIDDVQRCEGKLDSTYLEFEENFTAFSQRGDIFPKQGELLISKEEVIESFKDKK
VVFLDGLVKKNSWFNPYTTVNISERTLNNYQGQLDLLIDEISDKKNQGYKIVILSGTRAR
GERLVGTLRDRGIESSYKDTVDNIQYGEVVITFGNQLHGFQYPEYKVCVISDKEVFGEAK
RKLKKTKSKRKGIAKIKSFAELKPGDYVVHANHGIGVYKGIKQIEVAGHKRDYLDIVYDK
GDKLYVPVDQLDLIQKYVGSEGKSPKVNKLGSAEWQKAKAKVRKSINEIAEDLVKLYAMR
TTVKGHKFSKDTQWQKQFEDEFPYDETPDQLTSLEEIKADMESDKPMDRLLCGDVGYGKT
EVALRAAFKAVMDGKQVALLVPTTILAEQHYKNMKNRFSDFPIKIDMVSRFRSAKEQKET
LQKVKEGNIDILVGTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKNIKKNVDVLTLS
ATPIPRTLHMSLSGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFV
YNRVENIDAIAKYVQNLVPESKVGVIHGQMAERQLEQEMFNFMDQTYNVLVCTTIIETGM
DIQNVNTIIVYDADKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKILTEVAEKRLKALKD
FTELGSGFKIAMRDLEIRGAGNMMGSSQHGHMAAIGYDLYCRMLEDTVKLIRGEIQKEPV
ETTVDVKVDAFISADYIEDEIQKIEVYKKIAAIDSVDEYEDIKEELEDRYSTIPNPVRNL
MDIAYIKSQAKSLFIEEIKEMPREIVFRFAEGESDYKNIYKLLIEKYKDSVVLKFGLNPY
FSFKLKDIKQENKLEFLKEVFNDIIL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagattgaaggggttattagagccctttgaaaatagtgttgaatttgaaaatatatta
ggaagtattaataacgaaagatatcctattggtatatatggaattgctgaatcgggaaga
gtttatactattgatagtatctttgaaaatatagatagatctatggtaatagttactcaa
agtgatatggaagctaaaaatatatatgaggatttattgttatatactaatgatgttcac
tattttccagcgaaggaaatggttttctataatatagatgctatttcgggtgatttaaga
tgggcgagactaaaagttataaatgaaattttaaaaaagaagaaaaagataatagtaacc
tcaatagatgctttttcagcaagatacactcctcataaattatttgcagattatacaatg
aagtttaaagaaagtgatgaaataaacctcattgaagtatctaaaaaacttatacaatcg
ggttatgagagagttgaaatggttgaaggaaaggggcagttcgcattgagagggggaata
cttgatgtatttcctacatgttcggcttatccttatagaattgaacttttcggtgatgaa
attgactctataagaactttcaatacagaatcacagagaagtattgataaagttaagagg
atagaggtatttccagcaaaagaaataataataacagatgaaactatttctttaggtaaa
gaaaagttaaaaaaagaatttgataatatatcaaaaagtgatactgattcagctagggta
gaaaaattaagaaatatattaaataaaaacttagaatcattggaagaaacttcaacattt
gaaactatagatagttatcttccttatttctgcaaagaaacagaaagtctttttgattat
cttaaagattgtttatttataattgatgatgttcaaaggtgtgaaggaaaacttgattca
acatatttagaatttgaagagaactttactgcattttctcaaaggggagatatatttccg
aaacaaggtgaacttttaataagcaaagaggaagtaattgaatcttttaaagataaaaaa
gttgtatttttagatggattagttaagaaaaattcatggtttaatccatatacaacagtt
aatatttcagaaagaacattaaataactatcaaggtcagttggatttattaatagatgaa
atatctgataagaaaaatcaaggatacaagatagtaattttatcaggaacaagggctagg
ggcgaacgtttagtaggaactttaagagatagaggtatagaaagttcttataaagacaca
gttgataatattcaatatggtgaagttgtaattacatttggtaaccaacttcatggtttt
caatatcctgaatataaagtttgcgtaatatcagataaagaagtttttggagaagctaaa
agaaagcttaagaaaactaaatcaaagagaaaaggtattgccaaaataaaaagctttgct
gaattaaaacctggtgattatgtagtacatgcaaatcatggaataggtgtttataaggga
ataaagcaaatagaagttgctggtcataagagagattaccttgatattgtttatgataaa
ggtgataagttatatgttcctgtagaccaacttgatttaattcaaaaatatgtaggtagt
gaaggaaaaagtcctaaggtaaataaacttggaagtgctgaatggcaaaaggctaaagcg
aaagtaagaaaatctattaatgaaattgctgaggatttagtaaaattatatgctatgaga
actacagtaaaaggacataaattttcaaaggatactcaatggcagaaacaatttgaagat
gaatttccatacgatgaaactccagatcaattaacttcgttagaagaaataaaagctgat
atggaatcagataaacctatggatagacttttatgtggagacgtaggatatggaaaaacc
gaagtggctttaagggcagcttttaaagcagttatggatggaaagcaagttgcacttctt
gttccaactacaattttagcagaacagcattataaaaatatgaaaaatagattttcagac
tttcctataaaaatagatatggtaagtagatttagaagtgctaaagagcagaaagaaacc
cttcagaaagtaaaagaaggaaatattgatattcttgtggggactcacagacttgtatca
aaagatattcaatttaaagatttaggacttttaattgttgatgaagagcagagatttgga
gtaaaacaaaaagagaaaattaaaaatattaagaagaatgtagatgtactgacattaagt
gcaacaccaatacctagaactcttcatatgtcgctaagtggtgtgagggatatatctgtt
atagaaactcccccagaagagagatatcctgttcagacatatgttgttgagcagaatgat
cagctaataagagatgctattttaagagaaataggaagaggcggacaggtatatttcgta
tacaatagagtagaaaatattgatgctatagctaagtatgtgcaaaatcttgttccggag
agcaaggttggtgtaatacatggtcaaatggctgaaagacagcttgagcaagaaatgttc
aattttatggatcagacatataatgttcttgtatgtacgactattatagaaactggtatg
gatattcaaaatgttaatacaattattgtttatgatgctgataaaatgggattatcgcag
ctttatcagttaagaggaagagttggaagatctaatagaatagcatatgcttatttatta
tatacaaaggataagattttaactgaagttgcagagaaaagattgaaagcattaaaagat
tttactgaacttggttctggattcaaaattgcaatgagagatcttgaaataagaggtgca
ggaaacatgatgggatcatctcaacatggtcacatggcagcgattggttatgatttgtat
tgtagaatgttagaagatactgttaagcttataagaggagaaattcaaaaagaaccagta
gaaacaactgtagatgttaaagtagatgcattcatatctgcagattatattgaagatgaa
attcaaaaaattgaagtatataaaaagattgcagcaattgatagtgtggatgaatatgaa
gatattaaagaagagctagaagatagatattctacaatacctaatccagttcgtaatctt
atggacattgcttatataaaaagtcaggcaaaatcactgtttattgaagaaataaaagag
atgccaagagaaatagtattcagatttgcagaaggtgaaagtgattataagaatatatat
aagcttttaattgaaaaatataaagatagtgtagtattaaaatttggattaaatccgtat
ttctcatttaaattaaaagatattaagcaggagaataagttggagttcctaaaagaagtt
tttaatgacataatattgtaa
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