Clostridium butyricum: ATN24_02390
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Entry
ATN24_02390 CDS
T04197
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbut
Clostridium butyricum
Pathway
cbut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATN24_02390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbut03021
]
ATN24_02390
03400 DNA repair and recombination proteins [BR:
cbut03400
]
ATN24_02390
Enzymes [BR:
cbut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATN24_02390
Transcription machinery [BR:
cbut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATN24_02390
DNA repair and recombination proteins [BR:
cbut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATN24_02390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ALP89043
UniProt:
A0A0Q1DC92
LinkDB
All DBs
Position
1:513350..516886
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDAIQIGLASPDQIRAWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYIVTDPKETPLLKKQLLNEKEYREACDKYGEDSFVASMGAEAIQELL
AEIDLEAGSKELKEELKQSTGQKKVRIIRRLEVVESFRKSGNNPEWMVINVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMAIELFKPFVMKKLVQDGIAHNIKSAKRMVERVQPQVWDVLEEVIADHPVLLNRAPTLH
RLGIQAFQPILVEGRAIKLHPLACTAYNADFDGDQMAVHLPLSVEAQAEARFLMLAATNI
LKPSDGKPVCVPTQDMVLGSYYLTMDKDGAKGEGMTFSSKDEAIMAYESKAIAVHAKINV
RMFREIDGVVRHKVIKTTVGKLIFNESVPQNLGFVDRKNEDEMFNLEIDFLVTKKSLGKI
IDNCYLEHGPVKTSIMLDNIKALGYHYSSIGAVTVATSDIKVPPEKFELLKEADETIEKI
EKMYKRGFISDDERYERVIEKWTKTTEEVADALMDSMDKFNPIFMMADSGARGSKSQIKQ
LAGMRGLMASPSGKIIELPIRASFKEGLDVLEYFSSTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTDDGLYVSEIKEGNEVVEELKERLIGRYTAEDIINPENGEIIVA
NNQYMDPYIAERVVAAGIKKVKIKSVFTCNCKVGVCSHCYGMNMATAKKIDIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVATGADITQGLPRVEELFEARKPKGLAIVSEVTGTVKMEE
TKKKRTVVVMTADGEERSYDIPFGSRLKVTDGDNIEAGDEITEGSVNPHDIMSIKGIDGA
RRYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKVTDSGDTDLLPGTMIDMFDFREEN
ARVREFGGEEAKGEETLLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLVGLKE
NVIIGKLIPAGTGMMRYRDLKVDNVEEVVEEAITETVE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgcaatacaaatcggtttagcatctccagatcaaata
agagcttggtcaagaggagaagttaagaaaccagaaacaattaactacagaacattaaag
ccagaaagagatggtttattctgtgaaagaatttttggacctatgaaggactgggaatgt
cactgtggaaaatataagagagtaagatacaaaggtatagtttgtgacagatgtggtgtt
gaagttacaaaagctaaagtaagaagagaaagaatggggcacattgaactggctgcccca
gtatctcacatttggtacttcaaggggattccatcaagaatgggattaattcttgatatg
tcaccaagagctttagaaaaagttttatattttgcatcttatatagtgacagatcctaag
gaaacacctttattaaagaaacaacttcttaacgaaaaagaatatagagaagcttgtgat
aaatatggtgaagatagctttgttgctagtatgggtgctgaagcaattcaagaactttta
gcagaaatagatttagaagcaggttcaaaggaacttaaagaagaattaaaacaaagtaca
ggtcaaaagaaagttagaattataagaagactggaagttgttgaatcatttagaaaatca
ggaaataatcctgaatggatggtaattaacgtaattccagttattccaccagatttaaga
ccaatggttcaattagatggtggtagatttgctacatctgacttgaatgatttatataga
agagttattaatagaaataacagattaaaaaaattattagatttaggtgctccagatatc
attgtaagaaatgaaaagagaatgcttcaagaagcagttgatgcacttattgataatggt
agaagaggtagaccggtaactggaccaggaaatagacctttaaaatctctttcggatatg
ttaaaaggtaagcaaggtagatttagacaaaacttacttggtaagagagttgactactct
ggtagatcagttatagttgttggtccagaattaaaaatgtatcaatgtggtcttccaaaa
gaaatggcgattgagttatttaaaccatttgttatgaagaagcttgtacaagatggaatt
gcacacaatattaagagtgcaaagagaatggtagaaagagttcaaccacaagtttgggat
gtgttagaagaagttattgctgatcatccagttttacttaaccgtgctccgactctacat
agacttggaattcaagcattccaaccaatacttgttgaaggtagagcaattaagttacat
ccattagcatgtacagcgtacaacgctgacttcgatggagaccaaatggctgtccatctt
ccactttcagtagaagcacaagcagaagcaagatttttaatgcttgcagctacaaatata
ttaaaaccttcagatggtaaaccagtttgtgtacctacacaggatatggttcttggttct
tattacttaactatggataaggatggagctaagggtgaaggaatgacattctcaagtaaa
gatgaagctataatggcatacgaaagtaaagctattgcagttcatgctaaaattaatgtt
agaatgtttagagaaattgatggagttgttagacataaagttattaagactactgttggt
aagcttatatttaatgaatcagttcctcaaaacttaggatttgtagatagaaaaaatgaa
gatgaaatgtttaacttagaaatagatttcttagttactaaaaaatctttaggaaaaatt
atagataactgttacttagaacatggtcctgtaaagacttctataatgcttgataatata
aaagcattaggatatcattattcatctataggagctgtaacagtagcaacatctgatatc
aaagtaccacctgaaaaatttgagttacttaaagaagcagatgaaactattgaaaagatc
gaaaagatgtataagagaggtttcatatcagatgatgaaagatatgagagagttatagaa
aaatggactaagacaacagaagaagttgccgatgcattaatggatagtatggataagttt
aatccaatattcatgatggctgactctggagccagaggttctaagtcacagatcaagcag
cttgctggtatgagaggacttatggcaagtccatctggtaagattatcgaattaccaatc
agagcatcgttcaaagaaggtctagatgtactagaatatttctcatctacacatggtgct
agaaaaggtaatgccgatacagccttaaagactgccgattcaggatacctaacaagaaga
cttgttgacgtttcacaagatgttatcgtaagagaagaagattgtggaactgatgatgga
ttatatgtaagtgaaattaaagaaggcaacgaagttgttgaagaattaaaagaaagatta
attggtagatatactgctgaagatataattaatcctgaaaatggtgagattattgttgca
aacaatcaatatatggatccatatattgcagaaagagttgtagcagcaggtatcaaaaaa
gttaagattaaatcagtatttacatgtaactgtaaagtaggtgtatgttcacactgttat
ggtatgaatatggctactgctaagaaaatcgatattggtgaagctgttggtatcatagca
gcgcaatcaatcggtgaaccaggaacacagcttacaatgagaacattccatacaggtggt
gttgccactggtgcagatatcactcaaggtttacctagagttgaagaattattcgaagct
agaaaaccaaagggtcttgcaatagtaagtgaagtgactggtacagttaaaatggaagaa
actaagaaaaagagaacagttgttgtaatgactgctgacggtgaagaacgtagctacgat
attccattcggttcaagattaaaagtaactgatggagataatatagaagctggagatgaa
atcacagaaggttctgttaatccacatgatatcatgagtattaagggaattgatggagca
agaagatacttactttcagaagttcaaaaagtttacagacttcaaggggttgatatcaac
gataagcatctagaagttgttgttagacaaatgactagaaagattaaggtaactgattct
ggagatactgatttattaccaggtacaatgatagatatgtttgactttagagaagaaaat
gctagagttagagaatttggaggagaagaagctaagggtgaagaaacattattaggtatt
actaaggcagccttagcaactgatagtttcttatcagcagcatctttccaagaaactact
agagtattaactgaagcagcaattaaaggaaaagttgatccattagttgggttaaaagaa
aatgtaattattggtaagcttattccagcaggtactggtatgatgagatatagagatctt
aaagtagataatgttgaagaagtagtagaagaagctataactgaaactgtagaataa
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