Clostridium butyricum: ATN24_04785
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Entry
ATN24_04785 CDS
T04197
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cbut
Clostridium butyricum
Pathway
cbut03410
Base excision repair
cbut03430
Mismatch repair
cbut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ATN24_04785
03430 Mismatch repair
ATN24_04785
03440 Homologous recombination
ATN24_04785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbut03400
]
ATN24_04785
DNA repair and recombination proteins [BR:
cbut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ATN24_04785
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ATN24_04785
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATN24_04785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ALP89470
LinkDB
All DBs
Position
1:1020286..1022052
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AA seq
588 aa
AA seq
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MAERWFIKNKKMDYKYMAHKYGITELMSKLIINRDITDDFLIKSYIKPEFNMLHEPRDMK
DMNKAVEIIINKIKNKNKIRIIGDYDVDGVISVYILYCALKRCGADVDYEIPDRIKDGYG
VNVGIIEKAKDEGIDTIITCDNGISAIDPIKTAKELGMTVIVTDHHDIPFVENELGERTF
IRSEADAILNPKQEECKYKFKSLCGAGVAFKLIQVLYEEFKISEEEAFDFIEFLAIATVC
DVVDLVDENRIFVKKGLEKINKTTNLGLQELLIECEIQDKKIGVYHLGFIIGPCINASGR
LDNAKKGVRLLLCEDEKEAVTLAKDLVKLNEERKSMTMNGVEDAIEIVENSDMKNNKVFV
IYLPHIHESLAGIIAGRIREKYNVPTLILTKSENGAKGSGRSIEEYNMFEELVKCKDLLD
KFGGHPMAAGFSLKEENIDEFRKRLNEKTTLNEEDLLRKVTIDTVLPLDKITYDLVNELE
RLEPFGKANSKPLFAEKDINVIKAMILGKNRNVLKMKLKTKAGKSIDGVYFGDIETFEEV
IRDKYGNDQLIKLYDGSYNDVKLDMVFYPDINEYNGNVSLQVIVQNYR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaagatggtttattaagaataaaaaaatggattataaatatatggcacataag
tatggaatcacagaacttatgagcaaacttataataaatagagacataacagatgatttt
ttgataaaaagctatataaaaccagaatttaatatgcttcatgaacctagagatatgaag
gatatgaataaagctgtagaaattattattaataagataaaaaataaaaataaaataaga
atcattggtgattatgacgtagatggtgtaataagtgtatatattttatattgtgcactt
aaaagatgtggtgcagatgtggattatgaaattccagatagaataaaagatggttatgga
gttaatgtaggaataatagaaaaggctaaagatgaaggaattgacacaataattacttgt
gataatggtatatcagctattgatcctattaaaacagctaaagaattaggtatgactgtt
atagttacagaccatcacgatataccatttgtggaaaatgaacttggagaaagaacattt
ataaggtcggaagctgatgcaatattaaatcctaaacaggaagaatgtaaatataagttt
aaatctttatgtggagcaggtgttgcgtttaaattaattcaggttttatatgaagaattt
aaaattagtgaagaagaggcttttgatttcatagagtttcttgcaatagcaacagtatgt
gatgttgttgatcttgtagatgaaaataggatatttgtaaagaaaggtctcgaaaaaata
aataaaacaacgaatttagggcttcaggaacttttaattgaatgtgagattcaagataag
aaaataggggtgtatcatcttgggtttataataggaccatgtattaatgcatctggaaga
cttgataatgccaaaaaaggtgttagacttcttttatgtgaagatgaaaaagaagctgtt
actttagcaaaagatttagttaagcttaatgaagaaagaaaatcaatgactatgaatggt
gttgaagatgccatagaaatagttgaaaactcagatatgaaaaataataaagtatttgtg
atatatcttcctcatatacatgaaagccttgctggaataattgcaggtagaataagagaa
aaatataatgttccaactttgattcttactaaaagtgaaaatggagcaaagggatctgga
agatcaatagaagagtataatatgtttgaagaacttgttaaatgtaaagacttattagat
aagtttggaggacatccgatggcagctggcttttcacttaaagaagaaaatatagatgag
tttagaaaaagacttaatgagaaaactacattaaatgaagaggatttattaagaaaagtt
acaatagatacagtattgccactagataaaataacatatgatcttgttaatgaattagaa
cgcttagaaccatttggaaaagcaaattcaaaaccattatttgcggagaaagatataaat
gtaattaaagctatgatattaggcaagaatagaaatgtacttaaaatgaaattaaaaact
aaagcgggaaaatcaatagatggagtttattttggtgatatagaaacttttgaagaagtt
ataagggataaatatggtaatgatcaacttataaaactttatgatggaagttataatgat
gtaaaactagacatggtcttttatccggatataaatgaatataatggaaatgtatcactt
caagttattgtacaaaattatagataa
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