KEGG   Clostridium butyricum: ATN24_05080
Entry
ATN24_05080       CDS       T04197                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K02405  RNA polymerase sigma factor FliA
Organism
cbut  Clostridium butyricum
Pathway
cbut02020  Two-component system
cbut02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cbut00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ATN24_05080
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    ATN24_05080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbut03021]
    ATN24_05080
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:cbut02035]
    ATN24_05080
Transcription machinery [BR:cbut03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ATN24_05080
Bacterial motility proteins [BR:cbut02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    ATN24_05080
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 UPF0122 HTH_23 Sigma70_ECF GerE HTH_16
Other DBs
NCBI-ProteinID: ALP89527
LinkDB
Position
1:1079718..1080446
AA seq 242 aa
MNALKEVDGKEQIIEEYIPLVKYIASRVMFAKNKYMEYEDLVSYGMIGLIDAINKFDNSK
GMKFSSYASIRIKGAMIDELRKNRPISKGAMDKLNRYNKAIEELQGTLLREPTTQEISNY
LGISSSEVAEIENYINYISMVSLESVIFSDDEDVNLMGVIEDKNSPSPHSYLEDKEKLEI
LTQAIELLKEKDRMILNLYYYEGLTLKEIGKILEVSESRVCQLHSRSIRNLRECMKKLHY
VD
NT seq 729 nt   +upstreamnt  +downstreamnt
atgaatgcactaaaagaagttgatggaaaagaacaaataatagaagaatatattccatta
gtaaaatatattgcctctagggttatgtttgcaaaaaacaagtatatggaatatgaagat
ttggtaagttatgggatgattggccttattgatgcaattaataaattcgataatagcaaa
ggtatgaaattttcttcatatgcatctatacgaataaaaggtgctatgattgatgaactt
agaaaaaatagaccaatatctaaaggtgctatggataaattaaataggtataataaagct
attgaggaattgcaaggaacattgttaagagaacctacgactcaagaaatatcaaattac
ctggggatatcttcaagcgaggttgctgaaattgaaaattacataaattacatatctatg
gtttctctagaaagtgttatattttctgatgacgaggatgtaaatctaatgggagttatt
gaagataaaaacagcccaagtccccattcatatttagaagataaggaaaagcttgagata
ttgactcaagcaattgaacttttaaaagaaaaagatagaatgatattaaatttatattat
tatgaaggcttaacacttaaagaaataggtaaaattcttgaagtatcagaatcaagagta
tgccaactacatagtagatctatccgtaatttaagagaatgtatgaaaaaacttcactat
gtagattaa

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