Clostridium butyricum: ATN24_11540
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Entry
ATN24_11540 CDS
T04197
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbut
Clostridium butyricum
Pathway
cbut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATN24_11540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbut03019
]
ATN24_11540
03009 Ribosome biogenesis [BR:
cbut03009
]
ATN24_11540
Enzymes [BR:
cbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATN24_11540
Messenger RNA biogenesis [BR:
cbut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATN24_11540
Ribosome biogenesis [BR:
cbut03009
]
Prokaryotic type
rRNA helicases
ATN24_11540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
PrkA
Motif
Other DBs
NCBI-ProteinID:
ALP91850
LinkDB
All DBs
Position
1:complement(2570042..2571484)
Genome browser
AA seq
480 aa
AA seq
DB search
MKNEFSKFNISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIP
ICEKVDWNENAPQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQ
KTHVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTT
LFSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLYYVDYNERFKLLNELLICEK
PETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRILSATDV
AARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDRYLKNIEEYI
GFGIPVKEHFTKEFISENLESGISYLKSKPKKKTEKAKAINNDITKIYLNGGKKKKIRAG
DIVGAISRIDGLTGDDIGIIDVQDNISYVDILNGKGKKVLDALKNITIKGKKLKCDRAKK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgaatttagtaagttcaatataagtgaagaaattttaaaagcagttgatgga
ttgggatataaaaaaccatcagaagtacaggaaaaagttattccagaaattatattaaat
aaagacgttatcgtaaaatcacagacaggaagtggaaagacagcagcctttgcaattcct
atatgcgaaaaagtagattggaatgaaaatgctccacaagtacttgttttaagtccaact
agagagctggctgtacaggttagtgaagattttgtgaatattggaaggtttaaaaggatt
aaatctgttgcagtatttggaaagcagcctataagtgagcaggcaagagctttaaaacaa
aagacacatgtagtatgtggtactccaggaagagtgcttgatcatattgacagaggaagt
cttgatgtgaaaaagataaaatattttgtaattgatgaagctgatgaaatgttgaatatg
gggtttatagggcaggttgaaggtgttataagaagacttcctaaaaagaaagttacaaca
cttttttcagcaactatttcagatgaaataagaactttatgtgaaaaatacatggataga
ccagtggacatttcaatagaaaagcagaaagtggtaaatgataatattgaacatggttta
tattatgttgattacaatgaaagatttaaattattaaatgaacttcttatatgcgaaaaa
cctgaaacggcagtgatatttggaagaacaaaagaaaatgttgatgagatttataatttc
ttaaaatcaaaaggttattcatgtggaagaattcatggtggaatgcttcaaaaagagagg
ttatctgcaatggatagttttagaaaaggagaatttagaattctttcagctacagatgtt
gctgcaagaggaattgacatagaaaatataacacatgtaataaattttgagcttccagtt
gaaaaagaagcttatgtacatagaataggaagaagcggaagagcaggaaaatcaggaaag
gccatatcaatatgttctaaacatggcgatagataccttaaaaatatagaagaatatatt
ggatttggaatacctgtaaaagaacactttacaaaggaatttataagtgaaaatttagaa
tctggaatatcatatcttaagtctaagcctaagaaaaaaacagaaaaagccaaggctatc
aataatgatataacaaaaatatatctaaatggaggcaagaaaaagaaaataagagcagga
gatattgtaggtgctatttcgagaatagatggattaactggagatgatatcggaataata
gatgttcaagataatatatcttatgttgatatattaaatggaaaaggaaaaaaagtactt
gatgcattaaaaaatattactattaaaggtaaaaaactaaaatgtgatagggcgaaaaaa
taa
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