Clostridium baratii: U729_1339
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Entry
U729_1339 CDS
T03506
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbv
Clostridium baratii
Pathway
cbv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U729_1339 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbv03021
]
U729_1339 (rpoB)
03400 DNA repair and recombination proteins [BR:
cbv03400
]
U729_1339 (rpoB)
Enzymes [BR:
cbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U729_1339 (rpoB)
Transcription machinery [BR:
cbv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U729_1339 (rpoB)
DNA repair and recombination proteins [BR:
cbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U729_1339 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AIY84610
UniProt:
A0A0A7G099
LinkDB
All DBs
Position
1443796..1447500
Genome browser
AA seq
1234 aa
AA seq
DB search
MVHPVQSGKRTRMSFGKVKDVTEIPNLIEVQLDSYQWFLREGLHEVFDDINPIGNFTGNL
VLEFVDYKLDMDNIKYTVEECKERDSTYAAPLKVSVRLTNNETGEIKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYSQSRDKSGKKLFSSTVIPNRGAWLEYETDSNDII
SVRIDKTRKLPISILARAMGFGSDQELINYFGEEERFKATIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAVSLIDSLFFDAKRYDLSRVGRYKFNKKLAINLRLANQIAAVDIVNPATG
EIMVEQGQKISRDMAEEIQNAGINSVDILIEDKVIRVIGNHFVDIAKHVSFDISDLNIKE
LVHYPTLMEILENYSDEETIKEEIKKNITRLIPKHIIKDDIFATISYELGLAYGIGYVDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDQEAITPQMLINIRPVAAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYARVNEYGFIETPYRIVDKENRRATDEIRYFTADEEDQYLVAKANEP
LDESGYFVNDKVTVRYMEEVIVVPSNEVDLMDISPRQIVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEFRAAADSGVLPKAKNAGVVSYVSASEIKVKRDVDGGI
DTYKLLKFKRSNQGTCINQRPLVSMGEMVFKNQVLADGPSTDLGEIALGKNIRMGFITWE
GYNYEDAMLISEELVREDVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDIKVFTRENGDELNPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASALGWHIATPVFDGATESDIEQCLQDA
GYNANGKTVLYDGRTGEAFDNEVTVGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDVRVLNDNNQEVQLRELTEENDSADLEVNIEGTEEFVQEQPAVESDD
NYTSEIEVEEEDYDGFQLEEFQDNLELDDFNDEH
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaatctggaaaaagaacaagaatgagttttggtaaggttaaagat
gtaacagaaataccaaatcttatagaagtacaattagattcctaccaatggtttttaaga
gaggggttacatgaagtctttgatgacattaatccaatcggaaactttacagggaattta
gtacttgaattcgttgattacaagcttgatatggataatatcaagtatacagtggaagag
tgcaaggagagagattctacttatgctgcaccactaaaggtctcagtaagacttacaaac
aatgaaacaggagaaataaaagaacaagaagtatttatgggagatttcccattaatgact
gaacaaggtacttttattattaatggtgctgaaagagttatcgtcagccaattagtaaga
tctccaggagtatactacagccaaagcagagataagagtggtaaaaaactattctcatca
actgttataccaaatagaggtgcttggcttgaatacgaaacagattctaatgacataatt
tcagtaagaatcgataaaacaagaaaacttcctatctcaatattagctagagctatggga
ttcggaagcgaccaagaattaattaactattttggcgaagaagaaagattcaaagctaca
atagaaaaagacaacactaagactaaagaggaagctttacttgaaatctataagagatta
agaccaggcgaaccaccaacagttgatagtgcagtttcattaattgattctttattcttt
gatgcaaagagatatgatttatcaagagttggtagatacaaatttaacaaaaagttagca
attaacttaagacttgcaaaccaaattgctgcagttgacatagtaaatcctgcaactgga
gaaataatggtagagcaaggccaaaaaatcagcagagatatggcagaagaaattcaaaac
gctggaataaactctgtagatatattaattgaagacaaagttataagagtaattggtaac
cactttgttgatatcgctaaacatgtatcatttgatataagcgatcttaacattaaggaa
ctagttcactacccaactttaatggaaattcttgagaattatagtgatgaagaaactata
aaagaagaaataaagaaaaacataacaagattaattccaaaacatatcataaaagatgat
atatttgcaactataagttatgaattaggattagcttatggaatcggatatgttgatgat
atagaccatttaggtaatagaagattaagatctgttggagaattactacaaaatcaattc
agaattggtttatcaagaatggaaagagtagttagagaaagaatgactattcaagaccaa
gaagcaatcactccacaaatgttaattaatataagaccagttgctgcagctattaaagaa
ttctttggtagttcacaattatcacaattcatggatcaaacaaatccattatcagaatta
actcacaagagaagattatctgccttaggaccaggcggtctttcaagagaaagagctggt
ttcgaagttagagacgttcaccattcacattatggtagaatgtgtcctatagaaactcca
gaaggaccaaacataggacttataaactctttagctacatatgcaagagttaatgaatat
ggattcattgaaactccatatagaattgtagataaagaaaatagaagagcaactgatgaa
ataagatacttcacagcagatgaagaagatcaatacttagtagctaaggctaatgaacca
ttagacgaatcaggatacttcgtaaacgacaaggttactgttagatacatggaagaagta
atagtagtaccttcaaatgaagtagatttaatggatatttcaccaagacaaatagtatct
gttgctacagctatgattcctttccttgaaaatgatgacgcatctagagcacttatggga
tctaacatgcaacgtcaagcagttccactattaaagccacaagctccaatagttggtaca
ggaatagaatttagagcagcagctgactcaggggtactacctaaagctaaaaatgcaggg
gtagtaagctatgttagtgcaagtgaaataaaagttaagagagatgtagatggtggaata
gatacttacaaacttcttaaattcaagagaagtaaccaaggtacttgtataaaccaaaga
cctctagtttcaatgggagaaatggtatttaagaaccaagtacttgcagatggtccttca
actgatttaggagaaatagcattaggaaagaacatcagaatgggattcataacttgggaa
ggttataactacgaagatgcgatgctaatctcagaagaattagtaagagaagacgtattt
acatcaatccatatagaagaatatgaatgtgaagcaagagacactaaacttggacctgaa
gaaataactagggatattccaaatgtaagtgaagatgctttaaaagatatagatgaaaga
ggaataatcagaatcggtgctgaagtaagatcaggagacatcttagttggtaaagtaact
cctaagggtgaaactgaattaacagcagaagaaagattattaagagctattttcggagaa
aaagcaagagaagtaagagatacttcattaagagttcctcatggagaagctggtatcata
gttgatattaaagtattcactagagaaaatggtgatgaattaaatccaggagttaacgaa
cttgtaagatgttatatagctcaaaagagaaaaatatcagttggagataagatggccgga
cgtcacggtaacaaaggggttatttcaagagtacttcctgaagaagatatgcctttctta
ccagatggtagaccacttcaaatatgcttaaatccactaggggttccatcacgtatgaac
atcggtcaggtactagaagttcacttaggatgggcagcaagcgcattaggttggcacatt
gctacaccggtattcgatggtgctactgaatcagatatagaacaatgcttacaagatgca
ggatacaatgcaaacggaaagactgttttatatgatggtagaactggagaagccttcgat
aatgaagttacagttggtataatgtatatcctaaaacttgctcacttagttgatgataag
attcacgcaagatcaactggtccatactcattagttactcaacaaccacttggaggtaaa
gcacaattcggtggtcaaagatttggtgagatggaagtttgggcactagaagcatacggt
gcagctcatacattacaagaaattttaacagttaagtcagatgacgttgttggtagagtt
aagacttacgaagcaatagttaagggtgaaaatatccctgaaccaggagttccagaatca
ttcaaggttcttataaaggaattacaagcactatgcttagacgtaagagtacttaatgat
aataaccaagaagttcaattaagagaattaactgaagaaaatgactcagcagatttagaa
gtaaatattgaaggaacagaagagtttgttcaagaacaaccagcagtagaaagtgacgac
aattatacttcagaaatagaagttgaagaagaagattatgacggttttcaactagaagaa
tttcaagataacttagagcttgatgattttaacgatgaacactaa
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