Clostridium baratii: U729_326
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Entry
U729_326 CDS
T03506
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cbv
Clostridium baratii
Pathway
cbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U729_326 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbv03019
]
U729_326 (rnr)
03016 Transfer RNA biogenesis [BR:
cbv03016
]
U729_326 (rnr)
Enzymes [BR:
cbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
U729_326 (rnr)
Messenger RNA biogenesis [BR:
cbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U729_326 (rnr)
Transfer RNA biogenesis [BR:
cbv03016
]
Prokaryotic type
tRNA degradation factors
U729_326 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
OB_HELZ2
Rho_RNA_bind
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AIY84330
UniProt:
A0A0A7FZL1
LinkDB
All DBs
Position
complement(339023..341254)
Genome browser
AA seq
743 aa
AA seq
DB search
MSIKHTLLQFMREEAYKPMTLSELVAVFDIRSDEIRAFKKVLNAMEREGLIVLTKKEKYC
IPERVGLVAGRLQGHQRGFGFLIPENEGEKDVFIPSSCMNGAMNGDKVLAQITREDRNGK
KREGEIVEVVERANNKIIGVYENSRNFGFVVPEDTRLHQDIFISKKDRNGANDGDVVIVE
VTKWPEKRRSPEGVITEVLGQKGDKGLDILTIIKKFGLPEEFPDKVLNYADKIDEEIEPK
EYKRRTDFRDLKMVTIDGEDAKDLDDAVSIERLPDGNFRLGVHIADVTHYVREKDPLDKE
ALKRGTSVYLIDRVIPMLPKKLSNGICSLNPKVDRLTLSCIMTIDKKGKVLDHSIHEGII
RTNERMTYADVTKILVDKDEELIKKYDYLYEDFKAMEELAMILRGRRMKRGAIDFEFEEA
KITLNSLGKPVEIKPYPREISNRIIEEFMLVCNETIAEYMYWTNLPFVYRVHEDPDEEKL
IKFREFIYNLGYTMKWGQEIHPGTLQEVLDKVKGKKEETVVSTLLLRSMMKARYSPESLG
HFGLAARYYCHFTSPIRRYPDLQIHRIIKEQINGKIDGGRAKKLIGIVDYASKQSSETER
VAQEAEREVDDLKKAEYMQERIGQEFEGIVSSVTSFGMFVELPSTIEGLVHITALEDDYY
VYDENHLALIGERTKNIYRLGDEVKVKCSKVDIENREIYFDLISDEEDEDIKEEALKELN
EKIPQVKKELKEVLAQSEDIIEE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgagcataaaacatacattattacaatttatgcgtgaagaagcatacaaaccaatgact
ttaagcgaattggttgcagtttttgatataagatcagatgaaattagagcatttaaaaaa
gtacttaatgcaatggagagagaaggattaatagtattaactaaaaaggaaaaatactgt
attccagaaagagttggactagttgctggtagacttcaaggacatcaaagaggatttggt
ttcttaataccagaaaatgaaggcgaaaaagatgtattcataccatcatcatgtatgaat
ggtgcaatgaatggagataaggttctagcacaaattactagggaagatagaaatggtaag
aaaagagaaggagaaattgtagaagtagttgaaagagcaaataacaaaataattggtgtt
tatgaaaatagcagaaactttggatttgttgttcctgaagatacaagacttcatcaagat
atattcatatcaaagaaagatagaaatggggctaatgacggagatgttgtaatagttgaa
gttactaaatggccagaaaaaagaagaagcccagaaggtgttataactgaagttttaggt
caaaagggagataaaggtcttgatatacttactataattaagaagtttggattaccagaa
gaattcccagataaagttttaaattatgcagataagatagatgaagaaatagaacctaag
gaatataaaagaagaacagactttagagatctaaaaatggttactatagatggtgaagat
gctaaggacttagatgatgctgtatctatagaaagattaccagacggcaattttagactt
ggagtacacatagcagacgtaactcactatgttagagaaaaagatccactagataaagaa
gccttaaagagaggaacatcagtatacctaatagatagagttattccaatgttacctaag
aaactttcaaatggaatatgttctttaaatcctaaagttgatagattaacacttagctgt
ataatgacaatcgacaaaaaaggtaaggtactagatcattcaatacatgaaggtattatt
agaactaatgaaagaatgacatatgcagatgttactaagattcttgtagataaagacgaa
gaattaattaagaagtatgattatttatatgaagactttaaagctatggaagagcttgct
atgattttaagaggtagaagaatgaagagaggagctatagacttcgaatttgaagaagct
aagataactcttaattctttaggaaaaccagttgaaataaaaccttatccaagggaaata
tcaaatagaattatagaagaattcatgcttgtatgtaatgaaacaattgctgaatatatg
tactggactaacttaccatttgtttatagagttcacgaagatccagatgaagaaaagctt
attaaattcagagaatttatttataatctaggatacacaatgaaatggggtcaagaaatt
cacccaggaactcttcaagaagttttagataaagttaaaggtaagaaagaagaaacagtt
gtaagtacgctacttttaagatcaatgatgaaagctagatattcaccagagagtttagga
cactttggtttagcagctagatactactgccactttacatcaccaattagaagatatcca
gaccttcaaattcatagaattataaaagaacaaatcaatggaaagattgatggtggaaga
gctaagaaacttataggaatagttgattatgcatcaaagcaatcttctgagacagaaaga
gttgcacaagaagctgaaagagaagttgatgatttaaagaaagcagaatatatgcaagaa
agaattggtcaagagttcgaaggaattgtttcatcagttacttcatttggtatgtttgta
gaacttccaagcacaatcgaaggattagttcatataactgcacttgaagatgattactat
gtatatgatgaaaatcatttagctttaattggagaaagaactaagaatatttatagactt
ggtgatgaagttaaagttaaatgtagtaaagttgatatagaaaatagagaaatttatttt
gatctaatttctgatgaagaagatgaagatattaaagaagaagctttaaaagaattaaat
gaaaagattcctcaagttaaaaaggaattaaaagaagtattagcacaatcagaagatata
atagaagaataa
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