Cupriavidus basilensis: RR42_m0440
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Entry
RR42_m0440 CDS
T03642
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
cbw
Cupriavidus basilensis
Pathway
cbw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RR42_m0440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbw03400
]
RR42_m0440
DNA repair and recombination proteins [BR:
cbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RR42_m0440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RR42_m0440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_23
AAA_21
nSTAND3
AAA_25
Viral_helicase1
cobW
DUF1924
Motif
Other DBs
NCBI-ProteinID:
AJG17853
UniProt:
A0A0C4Y4S2
LinkDB
All DBs
Position
main:complement(474837..477701)
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AA seq
954 aa
AA seq
DB search
MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMEKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYC
PDHNLALQAQSVSQMVDAALALPEDTKLMILAPVVANRKGEHSDLFDTMQAQGFVRFRIR
SGGGTTHEAPAVVYEVDALPKLKKTEKHSIDVVVDRVKVRPDIKQRLAESFETALRLADG
RAIALEIDTSQEHGFSSKFACPICSYSLQELEPRLFSFNNPMGACPSCDGLGQITFFDPK
RVVAFPNLSLASGAIKGWDRRNQFYFQMLQSLAAYYGFELDTAFEDLPAEVQEVVLHGSG
DVEIPFTYMNERGRTTVREHAFEGIIPNLERRYRETDSIAVREELAKYQNNQACPACHGT
RLRTEARHVKLGENDQARAIYEINGWPLRDALTYFLTLDMHGAKREIADKIVKEISARLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLI
GTLKHLRDIGNSVLVVEHDEDMIRACDYVVDIGPGAGVHGGMIVAEGTPQQIEQSANSLT
GQYMSGARRIEVPKERAAPDEEKLLRIINATGNNLRNVSAEIPVGLLTCVTGVSGSGKST
LINDTLYHAVARHLYGSTAEPAAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELFAGVPSAKERGYDPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGK
RYNRETLEVLYKGKNIHEVLDMTVEHAHEFFLAVPVVRRKLKTLLDVGLGYIRLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLKVIHKLRDQGNTVVIIE
HNLDVIKTADWLLDMGPEGGAGGGQVIAKGTPETVAASRASFTGKYLAPLLERS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaattagaatccgtggtgcccgtacccacaacctgaagaacatcaatctcgat
ctgccgcgcaacaagctgatcgtgattaccgggctgtccggatcgggcaagtcctcgctc
gccttcgataccctgtacgcggagggccagcgccgctacgtggagtcgctgtcggcctac
gcgcgccagttcctgcagctgatggaaaagccggacgtcgacctgatcgaggggctatcg
cccgcgatcgccatcgaacagaaggcaaccagccacaacccgcgctcaaccgtgggcacg
gtcaccgagatccacgactacctgcggctgctgttcgcgcgcgccggcacgccttactgc
cccgaccacaacctggcgttgcaggcgcaaagcgtctcgcagatggtcgacgccgcgctg
gcgctgccggaagacaccaagctgatgatcctggcgccggtggtggccaaccgcaagggc
gaacactccgacctgttcgacaccatgcaggcgcagggtttcgtgcgctttcgcatccgc
tccggcggcggcaccacgcatgaggcaccggcggtggtctacgaggtggatgcgctgccc
aagctgaaaaaaaccgagaagcattccatcgacgtggtggtggatcgcgtcaaggtgcgc
ccggacatcaagcaacgactggcggaatcgtttgagaccgcgctgcgcctggccgacggc
cgcgccatcgcgctggagatcgacaccagccaggagcacgggttcagctccaaatttgcc
tgcccgatctgctcgtactcgctgcaggaactggagccgcggctgttctcgttcaacaac
ccgatgggcgcctgcccgagctgcgacggcctgggccagatcaccttcttcgaccccaag
cgggtggtggccttccctaacctgtcgctggcctcgggcgccatcaagggctgggaccgc
cgcaaccagttttacttccagatgctgcaaagcctggcggcctactacggcttcgagctc
gatacggccttcgaggacctgccggccgaggtgcaggaagtcgtgctgcacggctcgggc
gacgtggagatcccgttcacctacatgaacgaacgtggccgcaccacggtgcgcgagcat
gccttcgagggcatcattcccaacctggagcgccgctaccgcgagaccgactccatcgcg
gtgcgcgaggagctcgccaagtaccagaacaaccaggcctgccccgcctgccacggtacc
cgcctgcgcaccgaggcgcgccacgtcaagctgggcgaaaacgaccaggcgcgcgccatc
tacgaaatcaacggctggccgctgcgcgacgcgctcacctatttcctgacgctggacatg
cacggcgccaagcgcgagatcgccgacaagatcgtcaaggaaatcagcgcgcgcctgaac
ttcctcaacaacgtgggcctggattacctgtcgctcgagcgcagcgccgacacgctgtcg
ggcggcgaggcgcagcgtatccggctggcgtcgcagatcggctccggcctgaccggcgtg
atgtacgtgctggacgaaccttccatcggcctgcaccagcgcgacaacgaccgcctgatc
ggcacgctcaagcacctgcgcgacatcggcaactccgtgctggtggtggagcacgacgaa
gacatgatccgcgcctgcgactacgtggtcgacatcggcccgggcgccggcgtgcacggc
ggcatgatcgtggccgaaggcacgccgcagcagatcgagcagtcggccaattcgctcacc
gggcagtacatgtccggcgcgcgccgcatcgaggtgccgaaagagcgcgccgcgcccgac
gaggaaaagctgctgcgcatcatcaacgcaaccggcaacaacctgcgcaacgtcagcgcc
gagatcccggtgggcctgctcacctgcgtgaccggcgtgtccggctcgggcaagtcgacg
ctgatcaacgacacgctctaccacgcggtggcgcgccacctgtatggctccacggcggag
ccggccgcgcacgaccgcatcgacgggctggagcatttcgacaaggtcatcaacgtcgac
cagagcccgatcggccgtaccccgcgctccaaccctgctacgtacaccggcctgttcacg
ccgatccgcgagctgttcgcgggcgtgccctccgccaaggagcgtggctacgatccgggc
cgcttctcgttcaacgtcaagggcgggcgctgcgaggcctgccagggcgatggcgtgatc
aaggtcgagatgcatttcctgccggacgtgtacgtgccttgcgacgtctgccacggcaag
cgctacaaccgcgaaacgctggaggtgctctacaagggcaagaacatccacgaagtgctc
gacatgacggtagagcacgcgcacgagttcttcctggcggtccctgtcgtgcggcgcaag
ctcaagacgctgctggacgtgggccttggctatatccggctgggccagtccgccaccacg
ctctcgggcggcgaggcgcagcgcgtcaagctgtcgctggagctgtccaagcgcgacacc
gggcgcacgctctacatcctggacgagcccaccacgggcctgcacttccacgatatcgag
ctgctgctcaaggtcatccacaagctgcgcgaccagggcaacaccgtggtcatcatcgag
cacaacctggacgtgatcaagaccgcggactggctgctcgacatgggcccggagggcggc
gcgggcggtggccaggtaatcgccaagggcacgccggaaacggtggcggcaagccgcgcg
agcttcaccggcaagtacctggcgccgctgctagagcgcagctga
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