Cupriavidus basilensis: RR42_m0591
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Entry
RR42_m0591 CDS
T03642
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbw
Cupriavidus basilensis
Pathway
cbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RR42_m0591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbw03019
]
RR42_m0591
Enzymes [BR:
cbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RR42_m0591
Messenger RNA biogenesis [BR:
cbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RR42_m0591
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AJG18004
UniProt:
A0A0C4Y777
LinkDB
All DBs
Position
main:640108..641826
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AA seq
572 aa
AA seq
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MRKGRPKRQFMSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTG
KTAGFTLPLLQLLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRS
MVMFGGVGINPQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGF
IHDIRKILNVLPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYP
VDRERKRELLAHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTR
ALTEFKAGTLRLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAI
SLVCVDEISLMRDIERLIKRQIEQTILPGFEVDPSIPAEPIQKGRQARGQGQGNGGGRGR
GQAPAGGQPRGRAPAADAGERQQRPARAPQGRGQAPAAADGQGQRRAPQAPGQRPAQGSG
RPASAGQGNPRNGQANGNRTGEANGNRAAGNGNGNGNGNGNGNRDRNGDVNGNRAGVNTH
AAQPRTGQDPARGRRPAPQAALLGGQRAKPTR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaagggcggccgaagcgtcaattcatgtctttttccgaacttggcttgtccgac
aagcttatgcgtgccgtggccgaacagggctataccacgccgactccgattcaagcgcag
gcgattcccgccatcctgaaagggggcgacctgcttgccggcgcgcagaccggcaccggc
aagacggccggcttcacgctgccgctgctgcaactgctgtccgagtcctcggccggccgc
gaacccgcgcgtggacagcgcctgccggtgcgcgcactggtcctgaccccgacccgcgaa
ctggcggcgcaggtggaagaaagcgtccgtaactacggcaagtacctcaagctgcgctcc
atggtgatgttcggcggcgtgggcatcaacccgcagatcgaacagctcaagcgcggtgtc
gatatcgtggtggccacgcccggccgcctgctcgatcacctgtcccagcgcaccatcgac
ctggcgcacgtggaaatgctggtgctggacgaagccgaccgcatgctcgacatgggcttc
atccacgacatccgcaagatcctcaacgtcttgccgccgaagcgccagaacctgctgttc
tcggccaccttctccgacgagatccgtggcctggccgaccgcctgctggacaaccccgcc
tccatcgaagtggcgcgccgcaataccacggccgaaaccgtggcacagcgcgtctacccg
gtggaccgcgagcgcaagcgcgaactgctggcccacctggtgcgcgagaacgactggcac
caggtgctggtgttcacccgcaccaagcatggcgccaaccgcctggctgagcagctcgac
aaggacggcctgtcggcattggcgatccacggcaacaagagccagtcggcccgcacgcgc
gcgctgaccgagttcaaggccggcacgctgcgcctgctggtggcgaccgatatcgccgcg
cgcggcatcgacatcgaccaactgccccacgtggtcaactacgacctgcccaacgtgccc
gaagactacgtgcaccgtatcggccgtaccggccgcgccggtgccgagggtgaggcgatc
tcgctggtctgcgtggatgaaatctcgctgatgcgcgatatcgagcggctgatcaagcgc
cagatcgagcaaaccatcttgccgggcttcgaggtcgatccgagcattccggccgagccg
atccagaagggtcggcaggcacgtggccagggccagggcaatggtggtggccgtggccgc
ggccaggctcccgccggcggccagccgcgcggccgcgcaccggcagcggacgccggcgag
cgccagcaacgtccggcacgcgcgccgcaaggccgcggccaggctccggccgcggccgat
gggcaaggccagcgccgcgcgccacaggcaccgggccagcgccctgcgcagggcagcggc
cggccggcttcggccgggcaaggcaacccgcgcaacggtcaggccaatggcaaccgcacc
ggcgaggccaatggcaaccgtgccgctggcaatggcaatggcaatggcaatggcaatggc
aatggcaaccgcgatcgcaatggcgatgtcaacggcaaccgcgccggtgtcaacacccat
gccgcgcagccgcgcaccggacaggatccggcacgcggccgccgtccggcgccgcaagcc
gcgctgctgggcggccagcgcgccaagcccacgcgctaa
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