Cupriavidus basilensis: RR42_m2167
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Entry
RR42_m2167 CDS
T03642
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cbw
Cupriavidus basilensis
Pathway
cbw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RR42_m2167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbw03021
]
RR42_m2167
Transcription machinery [BR:
cbw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RR42_m2167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
SPO22
Motif
Other DBs
NCBI-ProteinID:
AJG19559
UniProt:
A0A0C4YBI1
LinkDB
All DBs
Position
main:complement(2296627..2298588)
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AA seq
653 aa
AA seq
DB search
MASGAQRTVAETKTALTGKKPVGRGAASTTQADPATEATERSQQLRALIQLGRERGYLTH
ADISDHLQGNFTDTAAMESIVSTFAEMGVTIYEQTPDAEALLLRDSAVAASDDQADEEAE
VALSTVDSEFGRTTDPVRMYMREMSSATLLTRKQEVEIAKRIEDGLNRMVHAIAACPSTI
ATILELSERVARDETRIDELVDGLIEGEGDVAEAEEDTSRDEVVAEDESASDEPVDEGAA
AQANETASLAKLRDDCLTRFARVANHFEAMRKAYTAHGVESEGFLVAQLAVREELKSIRF
TAKTIERLCADVQTVVEEVRVVERQILQLMVERCGMPREEFIERFPGNETNLAWGRAIAG
ESRSYSDSVSRSLPDLEAHQQKLIDIHARVVLPLSELKQVNRQMLAAERQMRQAKHEMTQ
ANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTR
AIADQARTIRVPVHMIETINKLNRISREIMQRTGKAADPAALAERMEMPEEKVRSIMKIA
KEPVSMETPVGEDGDTSLGDMIADSDTASPAEAALHASLRATVREMLDDLTPREAKVLRM
RFGIDMSTDYTLEEVGKQFDVTRERIRQIESKAMKKMRHPSRADHLKAFLKEG
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtggcgcacaacggacggtggcagaaacaaagacagcattgaccggcaaaaag
cctgtcggcaggggtgcggcgtccacgactcaagctgatcccgcaaccgaagcaacggaa
cgcagccagcagctgcgcgcgctgatccagctgggcagggagcgaggctacctgacgcac
gcggatatcagcgaccatttgcagggcaatttcacggacacagcggcgatggaaagcatc
gtcagcacgttcgccgaaatgggcgtgacgatctatgagcagacgccggatgccgaagcg
ctgctgctgcgcgacagcgcggtcgccgcgtctgacgaccaggccgatgaagaggcggaa
gtcgcgctctcgacggtcgactccgaattcggccgcaccaccgatccggtgcggatgtac
atgcgggaaatgagctcggcaacgctgctgacccgcaagcaggaagtcgagatcgccaag
cggatcgaggacggcctgaaccgcatggtgcacgccatcgctgcctgcccgtccaccatt
gcgacgattcttgagctgtcggagcgggtcgcccgcgacgaaacgcgtatcgatgagctc
gtcgacggcctgatcgaaggggaaggcgacgtcgccgaagccgaggaagacaccagccgc
gacgaagtcgtcgccgaggatgaaagtgcctcggacgagcccgtcgacgaaggtgcggcc
gcgcaagccaacgaaaccgccagcctggccaagctgcgtgacgattgcctgacccgcttc
gcgcgcgtcgccaatcatttcgaagccatgcgcaaggcctacaccgcgcacggcgtggag
tcggaaggcttcctcgtggcacagctcgcggttcgggaggagctcaagtcgatccgcttt
accgcaaagaccattgagcgcctgtgcgccgatgtgcagacggtggtggaagaagtacgc
gtggtcgagcgccagatcctgcaactgatggtcgagcgttgcggcatgccccgtgaggag
ttcatcgaacgctttccgggcaacgagaccaatctcgcctggggccgcgcgatcgccggc
gagtcgcgttcgtacagtgattccgtttcccgcagcttgccggacctcgaagcgcatcag
caaaagctgatcgacatccacgcacgcgtggtgctgccgctgtcggaactgaagcaggtg
aatcgccagatgctggcagccgagcggcagatgcgccaggccaagcacgagatgacgcag
gccaacctgcgcctggtcatctcgatcgccaagaagtacgtgaaccgcggcatgcagttc
ctggacctgattcaggaaggcaacattggcttgatgaaggcggtcgacaagttcgagtac
cgtcgcggctggaaattctccacctatgcaacctggtgggttcgccaggccgtgacgcgc
gcgatcgccgaccaggcccggaccatccgggtgccggtgcacatgatcgagacgatcaac
aagctcaaccggatctcgcgcgaaatcatgcagcgcaccggcaaggcggcggatcccgct
gccctggccgagcgcatggagatgcccgaagagaaggtccgctcgatcatgaagatcgcg
aaggagccggtttcgatggaaacgccggttggcgaagacggcgacacgagcctgggcgac
atgattgccgactcggacaccgcgtcccccgccgaagccgcgttgcatgctagcctgcgc
gccaccgtgcgcgaaatgctcgacgatctgacgccgcgcgaggccaaggtgctgcgcatg
cgttttggcatcgacatgtcgaccgactacacgctggaagaagtcggcaagcagttcgat
gtgacccgcgagcggattcgccagatcgaaagcaaggcgatgaagaagatgcgccatccc
agccgcgcggaccatctgaaggcgttcctgaaggaaggctga
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