Cupriavidus basilensis: RR42_m2647
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Entry
RR42_m2647 CDS
T03642
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cbw
Cupriavidus basilensis
Pathway
cbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RR42_m2647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbw03019
]
RR42_m2647
03016 Transfer RNA biogenesis [BR:
cbw03016
]
RR42_m2647
Enzymes [BR:
cbw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RR42_m2647
Messenger RNA biogenesis [BR:
cbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RR42_m2647
Transfer RNA biogenesis [BR:
cbw03016
]
Prokaryotic type
tRNA degradation factors
RR42_m2647
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
CSD
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
AJG20033
UniProt:
A0A0C4YAR7
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All DBs
Position
main:complement(2814006..2816525)
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AA seq
839 aa
AA seq
DB search
MSGGDIAKALAVTRKEHDGFQKRLAAMERDGQIELNRKGRYELANQPNFVVGRVQGHRDG
FGFLIRDDGDDDIFLPERELQKAMHNDRAQVRVIGYDRRGRPEGQIVEILERANRYVIGR
LLSEGGVLVVAPEDKRISQDILIPPKSQGKAQVGQVVSVEIIDYPDRYVQPVGRVVEVLG
DFDDPGMEIEIAVRKYGVPHEFSDACAKEAAGLPDEVRESDLEHRIDLRDVPLVTIDGED
ARDFDDAVYCEPVKIGRSKGWRLVVAIADVSHYVRPGTALDADALDRATSVYFPRRVIPM
LPEKLSNGLCSLNPQVDRLCMVCDAVITAKGELKGYQFYPAVMHSAARLTYNEVWSVLSN
TKGPEAHKRADLVPHLQNLYELFQVLLKARRERGAIDFDTTETYIVCNAQGKIEQILPRT
RNDAHRLIEECMLAANVCAADFLERFKHPTLYRIHAGPGEEKLKNLREFLRTVGLSLAGG
DKPQAGDYADVMDKIKSRPDAPMLQTMLLRSMQQAVYSPDNIGHFGLSYEAYAHFTSPIR
RYPDLLTHRAIKAVLAHTKYRPAFAPGTALNTAIAPKARRMQAKDAAEKAERSAARAQRN
EAIWDELGLHCSANERRADEASRDVEAWLKCYFMRDKLGSEYSGTISSVTSFGIFVQLDE
LYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYRLTDRVRVQVSRVDLDARKIDFRLV
QEPSAKNLRGRAPTVDAAPRVPAAHAVPARKKGRQLAALLGGSSKPEESFDETLDRVIEE
QPVFEAVMTPVKPHVGHGAKAGGKPAKRAAKPKPQHLGSTHKGGAKPAGKSSRASRKRT
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgggcggcgatatcgccaaggcgctcgctgtcacgcgcaaagaacacgacggcttc
cagaaacgcctcgccgccatggagcgcgacggccagatcgaactcaaccgcaagggccgc
tacgagctggccaaccagcctaactttgtggtcggccgtgtgcagggccaccgcgatggc
ttcggcttcctgatccgcgacgatggcgatgacgacatcttcctgccggagcgcgagctg
cagaaggccatgcacaacgaccgcgcccaggtgcgcgtgatcggctacgaccggcgcggc
cggcccgaaggccagatcgtcgagatcctcgagcgcgccaaccgctacgtgatcggccgc
ctgctgagcgaaggcggcgtgctggtggtggcgcccgaagacaagcgcatcagccaggac
atcctgatcccgccgaaatcgcaaggcaaggcgcaagtcgggcaggtggtcagcgtcgag
atcatcgactacccggatcgttacgtgcagcccgtgggccgtgtggtggaagtgctgggc
gacttcgacgatcccggcatggaaatcgaaatcgccgtgcgcaagtacggcgtgccgcat
gaattctcggatgcctgcgccaaggaagccgccggcctgcccgacgaggtgcgcgagtcc
gacctggagcaccgcatcgacctgcgcgacgtgccgctggtgacgatcgacggcgaagac
gcgcgcgacttcgacgacgctgtctactgcgaaccggtcaagatcggccgctcgaagggc
tggcgcctggtggtggcaatcgccgatgtgtcgcactacgtgcgcccaggcacggcgctc
gacgccgatgcgctggatcgtgccacctcggtgtacttcccgcgccgcgtcatcccgatg
ctgccggaaaagctctccaacggcctgtgctcgctgaacccgcaagtcgaccgcctgtgc
atggtgtgcgatgctgtgatcaccgccaagggcgagctcaagggctatcagttctatccc
gccgtgatgcattcggcggcgcgcctgacctataacgaggtctggtcggtgttgtccaac
accaagggcccggaggcgcacaagcgtgccgacctggtgccgcacctgcagaacctgtac
gagttgttccaggtcctgctcaaggcgcggcgcgagcgtggcgcgatcgacttcgatacc
accgaaacctatatcgtctgcaatgcgcagggcaagatcgagcagatcctgccgcgcacc
cgcaacgatgcccaccgcctgatcgaggaatgcatgctggccgccaacgtgtgcgccgcc
gactttctcgaacgcttcaagcatcccacgctgtaccggatccacgccggcccgggcgag
gaaaagctgaagaacctgcgcgagttcctgcgcaccgtcgggctttcgctggctggtggc
gacaagccgcaggcgggcgactacgcggacgtgatggacaagatcaagagccgtcccgac
gcgcctatgctgcagaccatgctgctgcgctcgatgcagcaggcggtctacagcccggac
aacatcggccacttcggcttgtcgtacgaggcttacgcccacttcaccagcccgatccgc
cgttacccggacttgctcacgcaccgcgcgatcaaggccgtgctggcccataccaagtac
cggcccgcattcgccccgggcaccgcgctgaacaccgcgatcgcgcccaaggcgcgccgc
atgcaggccaaggatgctgccgagaaggcagagcgcagcgccgcgcgcgcccagcgcaac
gaagccatctgggacgagctcggcctgcactgctcggccaacgagcgtcgcgccgatgag
gcctcgcgcgatgtggaagcctggctcaagtgctacttcatgcgcgacaagcttggcagc
gagtattcgggcaccatcagctcggtcacctcgttcggcatcttcgtgcagctcgacgag
ctctacgtcgaaggcctggtccatgtcaccgagctgggcagcgattacttccagtacgac
gaagcgcgcaatgagctgcgcggcgagcgtaccggcatccgctaccgtctcaccgaccgc
gttcgcgtgcaggtttcgcgcgtggacctcgatgcgcgcaagatcgacttccgcctggtg
caggagccctcagccaagaacctgcgtggccgtgccccgaccgtcgatgccgcgccgcgc
gtgcccgccgcgcacgccgtgcccgcgcgcaagaagggccgtcagctggccgcgctgctg
ggtggcagctcgaagccggaagagtcgttcgacgaaacgctggaccgcgtgatcgaagag
cagccggtgttcgaagctgtcatgacgccggtcaagccgcacgtgggccatggcgccaag
gccggcggcaagccggccaagcgcgccgccaagcccaagccgcagcatctgggctcgacg
cacaagggcggcgccaagccggccggcaagagcagccgcgcttcgcgcaagcgcacctga
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