Cupriavidus basilensis: RR42_m3002
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Entry
RR42_m3002 CDS
T03642
Name
(GenBank) 3'-to-5' oligoribonuclease (orn)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
cbw
Cupriavidus basilensis
Pathway
cbw03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
RR42_m3002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbw03019
]
RR42_m3002
03009 Ribosome biogenesis [BR:
cbw03009
]
RR42_m3002
Messenger RNA biogenesis [BR:
cbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RR42_m3002
Ribosome biogenesis [BR:
cbw03009
]
Eukaryotic type
Pre-60S particles
RNases
RR42_m3002
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
CTD1
pP_pnuc_1
Motif
Other DBs
NCBI-ProteinID:
AJG20373
UniProt:
A0A0C4YBS0
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All DBs
Position
main:complement(3182678..3183328)
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AA seq
216 aa
AA seq
DB search
MTSQNTHVPSGVKSVKSENNLIWLDMEMTGLMPDTDRIIEIAIVVTDSELNILAEGPVLV
IHQEDAVLDGMDNWNKGTHGRSGLIDKVKASTLTEAQAEVELLAFLKRWVPAGKSPMCGN
SICQDRRFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFIKRQLHTALADILES
VEELRYYRTHFIRQSAPAAAPAAAAEASATPDTPAA
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgaccagccaaaatacccacgtccccagcggcgtcaaatccgtcaagagcgaaaacaac
ctgatctggctggacatggagatgaccggcctgatgcccgacacggaccgcatcatcgag
atcgccatcgtcgtgacggactccgaactcaacatcctggccgagggcccggtgctggtg
atccaccaggaagacgccgtgctcgatggcatggacaactggaacaagggcacccacggc
cgctcgggcctgatcgacaaggtcaaggcctcgaccctgaccgaagcgcaggccgaggtc
gagctgctggccttcctcaagcgctgggtgccggccggcaagtcgcccatgtgcggcaac
tcgatctgccaggaccgccgcttcatggcgcgctacatgcccaagctggaggcgttcttc
cactatcgcaacctcgacgtctccacgctcaaggaactgtgcaagcgctgggagccggcc
atccacaagggcttcatcaagcgccagctgcacaccgcgctggccgatatcctggaatcc
gtggaagaactgcgctactaccgcacccacttcatccgccagtcggcaccggcggcagca
cctgcagccgcagccgaggcgagcgcgacgccggataccccggccgcctga
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