Candidatus Symbiobacter mobilis: Cenrod_1035
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Entry
Cenrod_1035 CDS
T02877
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cenrod_1035 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbx03021
]
Cenrod_1035 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbx03400
]
Cenrod_1035 (rpoC)
Enzymes [BR:
cbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cenrod_1035 (rpoC)
Transcription machinery [BR:
cbx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cenrod_1035 (rpoC)
DNA repair and recombination proteins [BR:
cbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cenrod_1035 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AGX87133
UniProt:
U5NA54
LinkDB
All DBs
Position
complement(1118332..1122543)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKSLLDFFKQVAPEEHFETIRIGMASPETIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTEGGMTPLKPYAILTEDEYAKHTQEYGDEFQAKM
GAEAIKDLLQNMDIDDAIEKLRNDQTGSELKVKKNTKRLKLLEAFKKSGLKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPDIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFARLEAMGIAATIKLAKKEVEAGTPVVWDILEEVITEHPIL
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPSNGEPSIVPSQDVVLGLYYTTRERINARGEGMIFSDVGEVQRAFDAGQV
EAGTRIHVRLTEYTRNKATGELEASTQLRDTTAGRALLSEILPKGLPFALINKALKKKEI
SRLINASFRKCGLKETVVFADRLLQYGFRLATRAGISISIDDMLVPPEKPAVIERAEIEV
KEIAQQFTSGLVTAGERYNKVVDIWGKVGDEVSRVMMAQLSKEMVTDRHGKVVPQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPIRANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTQEDCGTHGGYIMRAVMEGGEVIESLRDRILG
RTAADDIPHPETNEVLVDAGTLLDEDWLDELEAAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGVVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASRIESKSGGTVGFN
ATMRYVTNNQGDLVVISRSGEILIHDGHGRERERHKVPYGAVLSIKPDESVKAGAVLATW
DPLTRPIITEYAGQVRFENLIEGQTLAKQVDEVTGVSTLVVIDPKRVGVARALRPQVKLL
DAEGNEVRIPGTDHAVSIGFPVGALLHVRDGQEVGPGTVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGVLAEMTGTVSFGKETKGKLRLQITDPDGKVWDILVPKEKNILVHDGQ
IVNKGELIVDGPADPQDILRLLGAQELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNPGESDYIAGEQVERSEILDTNDALLADSKIPATYHNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDQLRGLKENVIVGRLIPAGTGLAYADARKVREKMEAEERDA
IALAEAEEKDDSDADAAGAGEPV
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattgctcgactttttcaagcaggtcgcaccggaagaacatttcgagacgatc
cgcatcggaatggcctctcccgagaccattcgctcgtggtcattcggggaagtcaaaaag
cccgaaaccatcaactaccgcacgttcaagcccgagcgcgacggcctgttttgcgccaag
atttttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgtggggtgatctgcgaaaagtgcggagttgaagtcacgcagaccaaggtgcggcgcgag
cgcatggggcatatcgacctggccgcgccgtgcgcgcacatctggttcctcaagtccttg
cccagtcggctggggttggtgctggacatgaccttgcgtgacattgagcgggtgttgtac
tttgaagcctatgtcgttaccgaggggggaatgactcccctcaagccctacgccatcctg
acagaggatgaatatgccaagcatacgcaggagtatggtgacgagttccaggccaagatg
ggtgcggaagccatcaaggatctgttgcaaaacatggatatcgacgatgccatcgagaaa
ctccgcaatgaccagactgggtccgaactcaaggtcaagaaaaacaccaagcggctcaag
ctgctggaggctttcaagaagtccggcctcaagccagagtggatggtgcttgacgtcttg
cctgtcctgcctcccgatttgcgccctctcgttcccctcgatggcgggcgttttgcaacc
tccgacctcaacgatctttaccggcgtgtgatcaatcgcaacagtcggctgcgtcggctg
ctcgaactcaaggcgccggacatcattgcccgcaacgaaaagcggatgctgcaagaagcc
gtcgatagcctgctcgacaacggccgccgtggcaaggcgatgaccggggccaacaagcgg
gcgctcaagtcgttggcggacatgatcaagggcaagggagggcgcttccgccaaaacctg
ctgggcaagcgtgtggactattcaggccggtctgtaattacggtcggccctacgctcaag
ctccaccagtgcggtttgcccaaactgatggcgctggagttgttcaagcccttcattttt
gccaggctggaagccatgggcatcgcggcaacgatcaagctggccaagaaagaagtcgaa
gccggcacccccgtggtgtgggacatcctcgaagaagtcatcaccgaacacccgatcctg
ctcaatcgcgctcccacactgcatcggctgggtatccaagccttcgaacccatcctcatc
gaaggcaaggccatccagttgcacccgctggtttgcgctgcgttcaacgccgacttcgac
ggcgaccagatggccgtacacgtgccgttgtccgtcgaggcacagatggaggcgcgcacg
ctgatgcttgcttccaacaatgtgttgttcccttccaatggcgagccgtcgatcgtcccg
tcgcaagacgtggtgctgggcctgtactacacgacccgcgaacgcatcaacgcccgtggc
gagggcatgatcttttccgatgtcggcgaggtgcagcgcgcctttgatgccgggcaggtc
gaagccggtacgcgcatccatgtgcggctgaccgaatacacccgcaacaaggcgaccggg
gagcttgaagccagcacgcagttgcgggataccacggcaggccgtgcgctgttgtcggaa
attctccccaaggggctgccttttgcgttgatcaacaaggcactgaagaagaaagaaatc
tcgcggcttatcaacgcctcgtttcgcaagtgcggactcaaggaaacggtggtttttgcg
gatcggctgctgcaatatgggttccggttggccacccgcgcgggcatttcgatttcgatc
gacgacatgctcgtccccccggaaaagcctgccgtcattgagcgtgcggagattgaggtc
aaggaaattgcccagcagttcacttccggtctcgtgacagcgggggaacgctacaacaag
gttgtcgatatctggggcaaggtgggcgacgaggtctcgcgcgtgatgatggctcagctc
tccaaagagatggtcactgaccggcatggaaaggtggttccccaggaatccttcaattcg
atctacatgatggccgactccggagcacggggttctgccgcgcagattcggcaggtggcc
gggatgcgggggctgatggccaagcctgacgggtcgatcatcgaaaccccgatccgcgcc
aatttccgcgaaggcctcaatgtgttggagtacttcatctccacccacggtgcgcgcaag
gggttggccgatacagcgttgaaaaccgccaactccgggtacctgactcgccgtctggtc
gatgtcacgcaagacttggtcgtcacgcaggaagactgtggcacgcatggcgggtacatc
atgcgcgcggtgatggaaggcggtgaggtcatcgaatccttgcgggatcgaattctgggc
cgcacggctgccgatgacattccccaccccgaaacgaacgaggtcctcgtcgatgccggt
accttgctcgacgaggactggctcgacgaactggaggctgccggtgttgacgaagtcaag
gtgcgcacggcgttgacgtgcgaaacaagatttggtatctgcgccaagtgctatgggcgt
gacctggggcgcgggggcgtggtcaatctgggcgaggctgtcggcgtcattgccgcgcag
tcgatcggggaaccgggaacgcagctcaccatgcgtacgttccacatcggtggcgcggca
tcccgcgctgcggtggcttcgcgcatcgaatccaagtccggcggtaccgtcggcttcaac
gcgacgatgcgctatgtgacgaacaaccagggtgatctcgtcgtcatctcccgctctggc
gaaatactgattcatgatgggcacgggcgtgagcgtgaacggcacaaggtgccctacggc
gcggtgttgagcatcaagcccgatgaaagcgtcaaggcgggagccgtccttgcgacgtgg
gatccacttaccaggccgatcatcacggaatatgccgggcaggtgcgcttcgaaaacctg
atcgaaggccagacgctggccaagcaggtcgatgaagtcaccggggtgtctaccctcgtc
gtgatcgaccccaagcgcgtcggtgtagcgcgggcgctgcgtccgcaagtcaagctgctc
gatgccgagggcaatgaggtgcgcatccccggtacggaccacgccgtgtcgatcggcttc
cccgttggggcgttgttgcacgtgcgggacggacaggaagtcggcccgggaacggtgctt
gcccgcatccccgtggaagggcagaaaacccgtgacattaccggcggcttaccccgcgtg
gcggagctgttcgaggcgcgttcgcccaaagacaaaggtgtgttggccgagatgacgggt
accgtgtcctttggcaaggagaccaaaggcaagctgcgcttgcagatcaccgaccccgac
gggaaggtatgggacatcctggtaccgaaggaaaagaacatcttggtacacgatggccag
atcgtcaacaagggggaactcatcgtcgacggcccggccgacccccaggacatcctgcgg
ctgttgggcgcacaggaactggcgcgctatatcgttgacgaggtgcaagacgtgtaccgg
cttcagggcgtcaagatcaacgacaagcacattgaggtcatcgtccggcagatgctgcgg
cgtgttgtcgtcgacaaccctggtgaatcggactacatcgccggcgaacaggtcgagcgg
tcggaaattctcgatacaaacgatgccctgcttgcagatagcaagattccggccacatac
cacaatgtgttgctggggatcaccaaggcctcgctgtcgaccgatagcttcatcagtgcg
gcgtccttccaggagaccacccgcgtgctgaccgaagctgccatcatgggcaagcgcgac
caactgcgtggcctcaaagaaaacgtcatcgtcggtcggctgattcccgccggaaccggg
ttggcgtatgccgatgcacgcaaggtgcgcgaaaagatggaagccgaagagcgcgacgcc
attgcgttggcggaagccgaggaaaaagacgattccgacgccgatgcagcaggcgcaggc
gaacctgtctga
DBGET
integrated database retrieval system
