Candidatus Symbiobacter mobilis: Cenrod_1184
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Entry
Cenrod_1184 CDS
T02877
Name
(GenBank) DNA/RNA SNF2 family helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cenrod_1184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbx03019
]
Cenrod_1184
Enzymes [BR:
cbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cenrod_1184
Messenger RNA biogenesis [BR:
cbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cenrod_1184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGX87277
UniProt:
U5N7A7
LinkDB
All DBs
Position
1300247..1301725
Genome browser
AA seq
492 aa
AA seq
DB search
MNDPLPAPVTLPSDSELPQDFSGLGLAEPLSRAIAEMGYTAMTPIQAQAIPHVLRGRDVM
GAAQTGTGKTAAFALPLLQRLLAHQNASMSPARHPVRALVLLPTRELADQVAQQVRLFGQ
YTQLRSTVVFGGVDIKPQAVELKRGVEVLVATPGRLLDHIEAKHCALHQVEYVVLDEADR
MLDIGFLPDLQRILSYLPAQRTTLLFSATFSPEIKRLAASYLQNPITVEVSRSNAAASTV
EQHFYRVSDDDKRRALRQVLRQRGLKQAFVFVNSKLGCAQLARSLVREGLQATALHGDKS
QEDRLEALDAFKAGRFDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAG
LAGLAVTLVTKDSTRQVDEIAQLIKTRIDIEPFEFEEDLPDIRKQGHFNDGKRLYREDPA
DAPARPRSSPHRAPRPPADPIFAAPYEPPATDAPAPAWERAAPLRTGRGLSGNIKPRRKV
AALLHPTSLDNV
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcctctccctgcccctgtcaccctcccctccgattccgaattgccccaggat
ttttctggattggggctggcagaacccctctcccgcgccattgcagagatgggctacacc
gcgatgacgccgatccaggcgcaggccattccccatgtgctgcgcggacgggatgtgatg
ggcgcggcgcaaacaggcacaggcaagactgcggcgttcgccctccccctgctccagcgg
ctgttggcgcaccaaaatgcctcaatgtcgccagcgcgacaccctgtccgcgccctggta
ctgctccccacgcgggagctggccgatcaggtggcgcaacaggtgcggctattcggccaa
tacacccagttgcgcagcaccgtcgtttttggcggtgtcgatatcaaaccccaggctgtt
gagctcaagcgcggagtcgaagtactcgtggccacgccggggcgtctgctcgaccacatc
gaagcaaaacactgcgcgctccatcaggtggagtacgtcgtgctcgacgaagccgaccgc
atgctcgacatcggttttctgcccgacttgcagcgcatcctgtcgtacctgcccgcgcag
cggacgaccctgctcttttcggctaccttttcgccggagatcaagcggctcgcggccagc
tacctgcagaaccccatcacggtagaggtctcgcgctccaacgctgctgcatcgaccgtc
gaacagcacttctaccgcgtgtcggacgacgacaagcgccgcgcactgcggcaagtgttg
cgccagcgcgggttgaagcaggctttcgtcttcgtcaacagcaagctgggctgcgcgcaa
ctggcccgctccctcgttcgggaagggctgcaagccactgctctgcacggggacaaaagc
caggaagaccgcttggaggcattggacgccttcaaggccgggcgcttcgacctgctcgtc
tgcactgacgtggccgcacgcgggctggacatcaaggatgtgcccgcagtcttcaatttc
gatgtccccttcaatgccgaagactacgtccaccgcattggccgcacagggcgtgcaggg
ctggcagggctggccgttaccctcgtgaccaaggactcgactcgccaggttgacgagatt
gcccagctcatcaaaacgcggatcgacatcgaacctttcgagttcgaggaagacctaccc
gacatccgcaagcaaggccacttcaacgacggcaagcgcctgtaccgcgaagaccctgcc
gatgccccggcccgtccacgcagcagcccgcatcgtgcgccacgcccgcctgccgacccc
atcttcgccgcgccctacgaaccccctgccacagacgcccccgcacctgcctgggaacgc
gccgcgccattgcgcacagggcgtgggctatccggcaacatcaagccccgacgcaaggtc
gccgccttgctccaccccacctcgctcgacaacgtgtag
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