Candidatus Symbiobacter mobilis: Cenrod_1709
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Entry
Cenrod_1709 CDS
T02877
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cenrod_1709 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbx03019
]
Cenrod_1709 (pnp)
03016 Transfer RNA biogenesis [BR:
cbx03016
]
Cenrod_1709 (pnp)
Enzymes [BR:
cbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Cenrod_1709 (pnp)
Messenger RNA biogenesis [BR:
cbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cenrod_1709 (pnp)
Transfer RNA biogenesis [BR:
cbx03016
]
Prokaryotic type
tRNA degradation factors
Cenrod_1709 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
aRib
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AGX87794
UniProt:
U5NC79
LinkDB
All DBs
Position
complement(1870856..1872982)
Genome browser
AA seq
708 aa
AA seq
DB search
MTMFRKSTQTFQWGAHRVTMETGEIARQATAAVLLDMEGTVVLATVVAKTESKAGQDFFP
LTVDYLEKSYAAGKIPGSFFKREGRPSEYETLTSRLIDRPIRPLFPDGFFNEVHVVVHTL
SLNPEVDADIAAMVATSAALSLSGLPFHGPVGAARIGYVDGQYVLNPGQTARKNSRLDMV
VAGTDNALLMVESEADQLPEEIMLGAVVFGQEQFAVAIEAIHALVQQAGFAPWDWQPHPK
DEALIAKVRALAEGPLTAAYQIRNKQERTRSCRAAYTQVLDGLRADGVEFDEVKVQGMLF
DIEASLVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALAIATLGT
DRDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPDK
DVFPYIMRVVSEITESNGSSSMASVCGACLSLMDAGVPLKTHVAGVAMGLIKEGNRFAVL
TDILGDEDHLGDMDFKVAGSTTGVTALQMDIKIRGITREIMQVALAQAKEGRLHILGLMQ
QAMAQSRPDVSNFAPRLFTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDDDGTITIA
SADPAKAEEARKRIEQITADVEIGKVYEGNVTKLLDFGALVNLLPGKDGLLHISQIAHER
VEKVSDYLSEGQTVRVKVLEVDEKGRVKLSMKVLLDRPVAATNTEPRP
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgttccgcaaatctacccaaacgttccaatggggcgcgcaccgcgtcaccatg
gaaaccggcgaaatcgcccggcaagccaccgctgcggtactgctcgacatggaaggcacc
gtggtgctggccacggtcgttgccaagaccgagagcaaggctggccaagattttttcccc
ttgacggtggactacctcgaaaagtcctacgccgcaggcaagattccgggcagctttttc
aagcgtgaagggcgtcccagcgagtacgaaacgctcacgagccgcctgattgatcgtccg
atccgtccgctgttcccggatggcttcttcaatgaggtgcatgtcgtcgtgcatacgctg
tccctgaaccccgaggtcgatgccgacatcgccgcgatggtggcgaccagtgctgccctg
agtttgagcggattgcctttccacggtcctgtcggtgcagcccggatcgggtacgtcgat
ggccagtacgtgctcaatccggggcagaccgcacgcaagaacagtcgcctcgacatggtc
gttgccggcacagacaatgccctgctgatggtcgaatccgaggcagaccagctccccgag
gaaatcatgctcggggctgtagtgtttggccaagagcagtttgccgtggccattgaggcc
atccacgctctggtgcaacaagcagggtttgcgccgtgggactggcagccccatcccaag
gatgaagcgttgatcgccaaagtccgtgcgctggctgaaggcccgctcactgcggcctac
cagatccgcaacaagcaggaacgcacccgctcctgccgtgctgcatatacccaagtgctc
gacgggctgcgcgccgatggtgtcgagttcgacgaggtcaaggtgcaggggatgttgttc
gacatcgaggcctccctcgtccgtggacaaatcttgtccggcgaaccgcgcatcgacggg
cgcgacacccgcaccgttcgtcccatcgaaattcgtaccggcgtgttgcctcgtacccat
ggatcggcgctgtttacccggggggaaacccaggctttggccatcgccacactgggtacc
gaccgtgacgcccaacgcatcgacgcgctctccggcgactacgaagaccgtttcatgctg
cactacaacatgccgccattcgccaccggggaaacggggcgtgtcggaacgcccaagcgc
cgcgagatcggccatggccggttggccaagcgtgccctggttgcggtgctaccagacaaa
gatgtgttcccctacatcatgcgcgtggtatcggaaatcaccgaatccaacggttcttcg
agcatggcttccgtgtgcggggcttgcctaagcctgatggatgccggggttccgctcaag
acccacgtggctggcgtggccatggggctgatcaaggaaggcaaccgctttgccgtgctg
acggacatccttggtgacgaagatcaccttggcgacatggacttcaaagtagccgggtcg
acgacgggtgtcactgccttgcagatggacatcaagattcgtggcatcacccgcgaaatc
atgcaggtggcactggcgcaggccaaggaaggacgcctgcacattctcgggcttatgcag
caggctatggcgcagtctcggccggatgtgtccaacttcgctccccggctcttcacgatg
aagatcaacccggaaaagattcgcgatgtcatcggcaagggcggcgctgtgatccgcgca
ctgaccgaagagactggcacgcagatcaatatcgacgacgacggaacgatcaccattgct
tctgccgatcctgccaaagccgaagaagccaggaagcgcattgagcaaatcaccgcagat
gtcgaaatcggcaaggtgtacgaaggcaatgtgaccaagctcctcgattttggtgcgctg
gtcaacctgctccccggtaaggatgggttgctgcacatcagccagatcgcgcacgagcgc
gtcgaaaaggtgtctgactacctgagtgaagggcagactgtgcgggtcaaggtgctcgaa
gtcgatgaaaaagggcgggtcaagctgtcgatgaaagtcttgctagaccgtccggtagct
gctaccaatacggaaccccggccctga
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integrated database retrieval system
