Candidatus Symbiobacter mobilis: Cenrod_1813
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Entry
Cenrod_1813 CDS
T02877
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cenrod_1813 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbx03019
]
Cenrod_1813 (rne)
03009 Ribosome biogenesis [BR:
cbx03009
]
Cenrod_1813 (rne)
Enzymes [BR:
cbx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cenrod_1813 (rne)
Messenger RNA biogenesis [BR:
cbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cenrod_1813 (rne)
Ribosome biogenesis [BR:
cbx03009
]
Prokaryotic type
rRNA processing factors
Cenrod_1813 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
AGX87897
UniProt:
U5N943
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All DBs
Position
1991176..1993947
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AA seq
923 aa
AA seq
DB search
MKRMLINATQAEERRLAVVDGQKLLDYEIEIEGREQRKGNIYKAIVTRIEPSLEACFVDY
GEDRHGFLPFKEVARQYFQQGIPTGQAKISEALKEGQELLVQVEREERGNKGAALTTFVS
LAGRYIVLMPNNPRGGGVSRRVEGDDRTDLKEALDQLEYPNGMSIIARTAGIGRNAVELQ
WDLSYLLKLWSAIDAAAKGSKGPLLIYQESNLVIRAIRDYFHQEIGEILIDTDDVYEQAR
QFMAHVMPEHAPRVKRYRDDAPLFSRFQIEHQIETAYARTVTLPGGGAIVIDHTEALVSI
DVNSARAIKGSDIEETALRTNLEAAEEVARQARLRDLGGLIVIDFIDMEESRNRREVETR
LRDSLRQDRARVQFGTISRFGLMEMSRQRLRPALSEGASMPCPRCGGSGHVRDTESSALQ
ILRIVQEESHKDNTASVLCQVPVDVASFLLNEKRTEIAKIELKQRINVLVVPNKSLETPN
YLLERLKHDDPRLDNIEPSYRLAVEAEESTAVTRGSREPTNKQVPLIKGVLPDAPAPQAP
VREPAQRTAEAHGEPRDKTVVATPTIIEKGLFEWVKHLLGIFTAASQEQPAATAESPTPA
RAGGRRADRQRKPRNEPPQGTKAEAAFEKTDRFDKTDRADNNDKSDTPLARRSEPRQGAL
RTEQEAPMSPSSDGAQPPSGPRDPRDPRDPRPSRSGRSGRRTPRGGRAEGDSRTDPAQPA
APLASASLTEPVPAVDDALSAEGELGNDGASSASSADARGSRRQRDRFGRERKPRPATNA
DSTEAPVPPTTNDAPAQPAQAVQADAPLAPPTTLPVTAVPVAPLATAAMPAAPAIPAVPA
QPYRLPEQELAQVAQESGLVWVQSDTSKVAAAQQAIAAQPEPVHVPRERPAPAPLEDSAL
VLVETKRDLRTVVLPFEDSAPRQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgatcaatgcaacccaggccgaagaacgccgcctcgccgtggtggat
ggccaaaagttgctggactatgaaatagaaatcgaaggacgcgaacaacgcaaaggcaac
atctacaaggcgatcgtcacacgcatcgagccttcgctcgaagcctgcttcgtcgactac
ggcgaggatcgccacggctttctccccttcaaggaagttgctcgacagtacttccagcaa
ggcattcctaccgggcaggccaaaatttccgaagccctcaaggaagggcaggaattgctc
gtccaggtagaacgcgaggaacggggcaacaagggtgccgcgttgacgacgttcgtctcg
ctggccgggcgctacatcgtgctgatgcccaacaacccgcgtggcggcggggtctcccgc
agggtggaaggcgacgaccgtaccgacctcaaggaagcgctcgatcagctcgaatacccc
aacgggatgagcatcattgcccgcactgccggtattggccgaaacgccgtcgaactgcaa
tgggatttgagctacctgctcaagctgtggtctgccatcgacgctgcagccaaggggagc
aaaggccccttgctgatctaccaggaatccaacctcgtcatccgtgcgattcgcgactac
ttccaccaggaaatcggcgaaatcctcatcgacaccgacgacgtgtacgagcaagcccgg
caattcatggcacacgtcatgcccgagcacgccccccgggtcaagcgctaccgtgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgaaacggcgtatgcacgcacc
gtaacgctgcctggcgggggggccatcgtcatcgaccacacggaagcgctggtctcgatc
gacgtgaactccgcccgcgccatcaagggcagcgacattgaggaaaccgcgctgcgcacg
aacctcgaagctgcggaagaagtcgcacgccaagcccgcctgcgtgacttgggcggtctg
atcgtcatcgacttcatcgacatggaagaaagccgcaaccgccgggaagtggaaacccgt
ctgcgcgattccctgcgccaggatcgcgcccgggtgcagtttgggacgatcagccgcttc
ggcctgatggagatgagccgccagcgtctgcgccctgcgctcagcgaaggcgcttcgatg
ccttgcccacgttgcggagggtccggccacgtccgcgataccgaatccagcgccctgcaa
atcctgcgtatcgtccaggaagaatcgcataaggacaacacagcatcggtgctatgccag
gttcccgtcgacgtggcatccttcctgctcaacgaaaagcgcaccgaaatcgccaagatc
gagctcaagcagcgcatcaacgtgctcgtcgtgcccaacaaatcactggaaacgccgaac
tacctgctcgaacgcctcaagcacgacgatccccggctcgacaacatcgaaccgagctac
aggctggccgtcgaagcggaggaatcgaccgcagtgacacgcggttcgcgcgagcctaca
aacaagcaggttccgctgatcaagggggtgctccctgacgcgcccgccccgcaagccccg
gtgcgggaacccgcccaacgcacagccgaagcgcatggcgaaccccgcgacaaaaccgtg
gtggccacgccgacgatcatcgaaaaagggctgtttgaatgggtcaagcacttgctgggt
atcttcaccgcagccagccaggagcagcctgccgccacggcggaatctcccacccctgcc
cgggcaggagggcggcgcgcagaccgccagcgcaaaccccgcaatgaacccccgcagggg
accaaggccgaggccgctttcgagaaaaccgatcgcttcgacaaaacagacagggccgac
aacaacgacaaaagcgataccccccttgcccgccgctccgaaccccgccagggcgccctg
cgcaccgagcaggaagcaccgatgtcgccctcgtccgacggcgcccagcccccctccggc
ccgcgcgacccccgtgatccgcgtgatccaagacccagccgcagtggccggtctggccgt
cgcaccccacgtggtggccgcgcagaaggcgactcgcgcacagaccctgcccaacccgcc
gcgccgctggcaagcgccagcctgaccgagcctgtgccagcggtagacgatgcactgtct
gcagaaggagagcttggcaacgatggcgcttcctctgcgtctagcgccgacgctcgcgga
tcgcgccgccagcgcgaccgttttggccgggaacgcaagccccgtcccgcaacgaatgcg
gacagtaccgaggccccggttccgcccactacgaacgacgccccggctcaacctgcgcag
gccgttcaggcggatgcgccgctggcaccgccaacgaccctgcccgtcaccgcagtaccc
gtagcgccccttgcaacggctgccatgcccgcagcacctgcaataccggccgtaccggcg
cagccataccgcttgcccgaacaggaattggcgcaggtagcgcaggaatccgggttggtg
tgggtgcagtcggatacgagcaaggttgctgctgcgcagcaagccattgctgcacagcct
gagcctgtccatgtccctcgcgaacgcccggctcccgctcccctcgaagactctgccctg
gtgctggtcgaaaccaaacgtgacctgcgcactgtcgtactccctttcgaggattcggct
ccccgccagtga
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