Candidatus Symbiobacter mobilis: Cenrod_2573
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Entry
Cenrod_2573 CDS
T02877
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx00300
Lysine biosynthesis
cbx00470
D-Amino acid metabolism
cbx01100
Metabolic pathways
cbx01110
Biosynthesis of secondary metabolites
cbx01120
Microbial metabolism in diverse environments
cbx01230
Biosynthesis of amino acids
Module
cbx_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Cenrod_2573 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Cenrod_2573 (dapF)
Enzymes [BR:
cbx01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
Cenrod_2573 (dapF)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
AGX88626
UniProt:
U5NAN3
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All DBs
Position
2830107..2831168
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AA seq
353 aa
AA seq
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MGGHGARCAGPSKLGGLRPPFLLVVPSQLDGCLMGAILATMRLSFAKMHGAGNDFIVLDE
TRSRLGLTAAAYRFLADRRFGVGADQILTVRPAPEPGVDFAYHIHNADGGEVEQCGNGAR
CFARYVRDAGLTDKNVLRVWTRAGVIEPTLVADGRVRVDMGPPMFALGQVPFDVDGVRAR
PCGTWEQWPLAWGAAQKSARERASEPAWKSAWESVSEPAWVCVLSMGNPHAVLRVDDVET
APVALWGPLIENHPRFPRRVNAGFLQVIDRSHVRLRVYERGAGETLACGTGACAAVVAGV
RAGWLDAEVDVAMRGGALTVRWDGADTPVWLTGPAVFVFRGEIDISDDLLTAP
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
ttgggtggccatggagcccggtgtgccgggccaagcaagttaggggggctaaggccccct
tttctattggtggttccctcccagcttgatggctgtttgatgggggccattttggcgact
atgcgactttcctttgccaagatgcacggagcgggcaacgatttcatcgtgctcgacgaa
acccgatcccgcctggggttgacggctgctgcgtaccgctttctggcagaccggcggttt
ggcgtaggggcagaccaaatcctgacggtgcggccagcgcccgaacccggggtcgatttt
gcgtaccacatccacaatgccgacgggggagaggtcgagcaatgcgggaacggggcacgc
tgctttgcccgctatgtgcgcgatgcggggttgacggacaaaaacgtcctccgagtctgg
actcgggccggggtgatcgaacccacgctggtggccgatggccgtgtgcgggtcgatatg
gggccgccgatgtttgcgttggggcaggtgccctttgatgtggatggagtgcgcgcccgg
ccctgcggaacgtgggaacaatggccgttggcttggggcgctgcccaaaaatcggcgcgg
gaacgggcatcggaaccggcatggaaatcagcgtgggaatcggtatcggaaccggcatgg
gtgtgcgtgctctcgatggggaacccccacgccgtgctccgggtcgacgatgtggaaacg
gctccagtggccttgtggggcccgttgatcgaaaaccatccccgttttccccggcgggtc
aacgctggctttttgcaggtgatcgaccggagccatgttcgcttgcgtgtgtatgaacgt
ggggcgggggagacgctggcgtgcggcaccggggcctgcgctgcagtggtcgcgggggtt
cgcgccgggtggctcgatgccgaagtggacgtagccatgcgaggcggtgcgctgaccgtg
cggtgggatggggcagacacccccgtgtggttgaccgggccagcggtgttcgtttttcgg
ggggaaatcgacatctccgacgatttgctgactgccccctaa
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