Clostridium botulinum A2: CLM_3955
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Entry
CLM_3955 CDS
T00883
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cby
Clostridium botulinum A2
Pathway
cby03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cby00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLM_3955 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cby03021
]
CLM_3955 (rpoC)
03400 DNA repair and recombination proteins [BR:
cby03400
]
CLM_3955 (rpoC)
Enzymes [BR:
cby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLM_3955 (rpoC)
Transcription machinery [BR:
cby03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLM_3955 (rpoC)
DNA repair and recombination proteins [BR:
cby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLM_3955 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACO84388
UniProt:
C1FMV8
LinkDB
All DBs
Position
complement(3980705..3984241)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETPLLKKQLLNEKEYRESIDKYGDDSFVAAMGAEAVKTLL
DEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVQNGLAHNIKSAKRMVERVQPQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVSVPTQDMVLGSYYLTMDKDGVKGEGKVFSCPEEVLMAYQCKAVDIHAKIKV
RLKKVIDGETIEGIIETTPGKIIFNESIPQDLGYIDRTIPENKLKLEVDFLVSKKTLGGI
INRCYMKHGATKTSIMLDKIKAKGYHYSTIGAITISTSDMVVPEAKRELLQNTEKQVEKI
QKMYRRGFISEEERYEKVIDLWTKTTEDVANALMASLDSFNPIYMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRQEDCGTEEGYEVSEIKEGNEVIEPLVERLSGRYPSEDIIHPTTGEIIVK
RNTYMNEDIAKKVSDAGIKKVKIRSVFTCKSKHGVCARCYGMNMATSQKIHIGEAVGIVA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRTIIVVTDDGEEVSYDIPFGSRIKVKNGDIISAGDEITEGSINPHDILRIKGVDGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIEDSGDTELLPGTMIDVFDFEEANK
EILEKGGEPAVGRIALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKEN
VIIGKLIPAGTGMTRYRSIQINTDDENIEEDSIDLIEV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagttaaataattttgatgctttacaaataggtttagcttcaccagaaaagata
agagagtggtcaagaggtgaagttaaaaagccagagactataaattatagaacactaaaa
ccagaaagagatggtttgttctgtgaaagaatttttggtcctatgaaggattgggaatgc
cattgtggtaaatataaaaggataagatataagggcatagtttgtgatagatgcggagta
gaggttactaaagctaaagtaagacgtgagagaatggggcatatagaacttgctgcccct
gtatctcatatatggtatttcaaagggattccatcaagaatgggattaatattagatatg
tcgccaagagctttagaaaaagttttatactttgcttcgtatgtagtattagatccaaaa
gaaacacctcttttaaagaaacaattattaaatgaaaaagagtatagagaatctatagac
aaatatggagatgacagctttgtcgcagcaatgggtgcagaagctgtaaagactctttta
gacgaaatagatttagaacaatcatctattgaacttaaagaagagttaaaaacaagtaca
ggacaaaagaaaataagaataataagaagattagaggtagtagaatcctttagaaaatca
ggaaatagacctgattggatggttatagatgttataccagtaattccacctgatttaagg
ccaatggttcaattagatggaggaagatttgctacatctgatttaaatgatttgtataga
agagttataaatagaaataacagattaaaaaaattgttagacttaggggctccagatata
attgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgctttaatagataatggt
agaagagggagaccagtaacaggaccaggaaatagacctcttaaatcattatcagatatg
ttaaagggtaagcaaggtagatttagacaaaacttactaggaaagcgtgttgactattca
gggcgttcagttatagttgtaggaccagaattgaaaatgtaccaatgtggtttaccaaaa
gaaatggctcttgaattatttaaaccatttgttatgaaaaaacttgttcaaaatgggtta
gcacataatataaaaagtgctaagagaatggtagaaagagttcaaccccaagtttgggat
gtattagaagaagttatttctgatcacccagtattattaaaccgtgcccctactcttcat
agattaggaattcaagccttccaacctgtgttagtagagggaagagcaattaaacttcat
ccacttgtatgtacagcatataatgcagacttcgatggagaccaaatggctgttcacgta
cctttatcagttgaagctcaagcagaggcaagattcctaatgctagcagcacataatata
ttaaaaccatctgatggtaaaccagtgtctgtacctacacaagatatggttttaggttct
tattacttaacaatggataaagatggagtaaaaggtgaaggaaaagtattttcttgtcca
gaagaagtacttatggcatatcaatgcaaagctgtcgatatacatgctaaaataaaagta
agattaaagaaagttatagacggagagactattgaaggaataatagaaacaacgccagga
aaaattatatttaatgaatctataccacaggatttaggatatattgatagaacaatacct
gaaaataaattaaaactagaagtagattttcttgtatctaaaaagacattaggtggaata
attaacagatgctatatgaaacatggtgcaacaaaaacttctataatgttagataaaata
aaagcaaaaggatatcattattctactataggagctattactatttctacttcagacatg
gtagtgccagaagctaaaagagaattattacaaaatacagaaaaacaagtagaaaagata
caaaaaatgtatcgtagagggtttatatctgaggaagaaagatatgaaaaagttattgac
ctttggactaaaacaacagaagatgtagctaatgctcttatggcaagtttggatagtttt
aatcctatatatatgatggctgattcaggagccagaggttctaaaagtcagataaaacaa
ttagcaggtatgagaggtcttatggctaatccatcaggtaaaattatagagttaccaata
aaagcttcttttagagaaggtctagacgtgttagagtattttatatcaacacacggtgct
agaaaaggtaacgcagatacagctttaaaaacagctgactcaggatatttaactagaaga
cttgttgacgtctcacaggatgttatagtaaggcaagaagattgtggaacagaagaagga
tatgaagtatctgaaataaaagaaggaaatgaagtaatagagcctttagttgaaagatta
tcaggcagatatccttcagaagatattattcatcctacaacaggagaaataatagtaaaa
agaaacacatatatgaatgaagatatagctaagaaggtatcagatgcaggaattaaaaaa
gttaaaataagatctgtattcacttgtaaatcaaaacatggtgtttgtgctagatgttat
ggtatgaatatggctacatcacaaaaaattcatataggtgaagcagttggtattgttgct
gctcaaagtataggagaaccgggaactcagcttacaatgagaacattccatacaggtggt
gttgctggagctgatataactcaaggtcttccaagggttgaagagcttttcgaagctaga
aaacctaaggggttggctatcgtaagtgaagtatcaggaacagtaaaaatggaagaaact
aagaaaaaaagaacaataatagttgtaactgatgacggtgaagaagtttcctacgatatt
ccatttggttctagaataaaagttaaaaatggagatattatatcagcaggagatgaaata
acagaaggttcaataaatccacatgatattttaagaataaaaggtgttgacggagttaaa
aattatcttttatcagaagttcaaaaagtttatagactacaaggtgttgatataaatgat
aaacatcttgaagtagttataagacaaatgacaagaaagataaaaattgaagattcagga
gatacagaattattacctggaacaatgatagatgtttttgattttgaagaagccaataaa
gaaatattagaaaaaggtggagaaccagcagtaggtagaatagctttattaggaataaca
aaagctgcactggctacagattcattcctttcagctgcatcattccaagaaactacaaga
gttcttacagatgctgctataaaagggaaaattgatccactattaggtttaaaagaaaat
gtaattattggtaaattaatacctgcaggtacaggtatgacaagatatagatctattcaa
ataaatactgatgatgaaaatattgaagaagattctatagatttaatagaagtatag
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