Clostridium beijerinckii ATCC 35702: Cbs_2925
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Entry
Cbs_2925 CDS
T03415
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbz
Clostridium beijerinckii ATCC 35702
Pathway
cbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cbs_2925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbz03019
]
Cbs_2925
03009 Ribosome biogenesis [BR:
cbz03009
]
Cbs_2925
Enzymes [BR:
cbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cbs_2925
Messenger RNA biogenesis [BR:
cbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cbs_2925
Ribosome biogenesis [BR:
cbz03009
]
Prokaryotic type
rRNA helicases
Cbs_2925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RRM_9
AAA_22
Ferritin_2
Motif
Other DBs
NCBI-ProteinID:
AIU02469
LinkDB
All DBs
Position
complement(3426728..3428302)
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AA seq
524 aa
AA seq
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MENKVFSELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGA
PVLSRIRSSEGKISSIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALR
RGIDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQT
MLFSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDV
DEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFLIAT
DVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEK
VTKSKIRRREIPTVDEIFVSKYKNMFSKIKETLEQDSYKKFIPMATELDEEFNLVEVAAA
LMDMVYSKEVNYDYTENEIGSKTDYKRLFLNVGRLDKINPRKLVDFFNENAKVKREDVGD
IDILEKFSFVNVTEAAAESIMKHCTGKKFAGRKLNVEISTKSKR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaataaagtatttagcgaattgggtcttgatgagaatattcttaaagctattgat
gcaatgggatttgaagaaccatctaagattcaggctgaggtaataccagttcttctagaa
ggccatgatgttattgggcaggcacaaactggaactggaaagacactggcatttggagca
ccagttttgagcagaattagaagctcagaggggaagataagcagtatcatactaactcct
acaagagagcttgctatacaggtaaatgatgaactaaatcgtatagctaagtttactaag
attaagttacttcctgtatacggtgggcaacctattgacaggcagatttcagctttacgc
aggggaatagatatagtagtaggaactccgggtagagtgttggatttaataagaagaaaa
gtcttgaatttaggttctatcaaattccttgtattggatgaggctgacgaaatgctaaac
atgggatttattgatgatatagaagaaataataaaaaattcaaatcaagacaggcagaca
atgttgttttcagctactatgcctgaagaaatcaaaagacttgctaaaagatatatgaag
tctgaaacgaaacacatagccattttaaaaaatgcaatgactgtagctacagtggatcaa
tactattatgaaattaaaaacaaggataggtttgaaacactatgcagaatactggatgtt
gatgaacctacttctgcaataatcttttgcaagaccaaaaggaatgttgatgaactggta
gaaggtctccagggaagagggtatactgctgaaggaatgcatggagatatgaatcaaaat
cagagaataaataccttaagaaaatttaaagaaggaagtttagaatttctgatagcaact
gatgttgctgcaagaggcatagatgttgaaaatgtaactcacgtaataaattacgatttg
cctcaggacgtagaatcctatgttcacagaataggcagaacaggtagagcaaatagaaaa
ggtgttgcttacacattggttactgcaagggaatatatgtctcttaaacatattgaaaag
gttacaaaaagcaagataagaagaagagaaattcctactgttgatgaaatatttgtttca
aagtacaaaaatatgttttcaaagataaaggaaactttggagcaggatagctataagaaa
tttataccaatggcaacagaacttgatgaagagtttaacctcgtagaagtagcagcggca
ttaatggatatggtatatagtaaagaagtgaactatgactatactgaaaatgaaataggt
tcgaagacagattacaagagactgtttttgaatgtaggacgcttggataagattaatcca
aggaagctagtggatttctttaatgagaatgcaaaggtaaaaagagaagatgtcggagat
attgatattcttgaaaagttttcatttgtaaatgtaacagaggctgcagcggaatccata
atgaagcattgcactggaaagaaatttgctggaagaaagctaaatgtcgaaatttcaaca
aaatcaaaaagataa
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